Browse Element(s) Details


Os.49198.1.S1_at

Description gb:AK108084.1
DB_XREF= gi:32993293
TID=Os.49198.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49198 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-138-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-138-H05, full insert sequence.
FL= gb:AK108084.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5809011/11Harpin-induced protein 1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58050Os.50627.1.S1_at11/114+34354424..34355978expressed protein
LOC_Os04g58050OsAffx.4205.1.S1_x_at11/114+34354424..34355978expressed protein
LOC_Os04g58060Os.9005.1.S1_s_at11/114+34362040..34366473Protein arginine N-methyltransferase 6, putative, expressed
LOC_Os04g58060OsAffx.26652.1.S1_at11/114+34362040..34366473Protein arginine N-methyltransferase 6, putative, expressed
LOC_Os04g58070OsAffx.14464.1.S1_at11/114+34367746..34369168Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g58070OsAffx.14464.1.S1_x_at11/114+34367746..34369168Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g58080Os.55108.1.S1_at11/114+34376788..34378413Leucine Rich Repeat family protein, expressed
LOC_Os04g58090Os.49198.1.S1_at11/114+34378583..34379690Harpin-induced protein 1 containing protein, expressed
LOC_Os04g58100Os.34882.1.S1_at11/114+34382157..34385865expressed protein
LOC_Os04g58110Os.7908.1.S1_a_at11/114+34386142..34390006Pyruvate kinase, cytosolic isozyme, putative, expressed
LOC_Os04g58110Os.57474.1.S1_x_at10/114+34386142..34390006Pyruvate kinase, cytosolic isozyme, putative, expressed
LOC_Os04g58120OsAffx.14465.1.S1_s_at11/114+34393542..34394511expressed protein
LOC_Os04g58130Os.11640.1.S1_at11/114+34394640..34404029transducin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0009863biological_processsalicylic acid mediated signaling pathway
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49198.1.S1_at--818--4553Chr12:24142140..24142164 (25 bp)
GCGCGTGCCGATCCGCATCAAGTTC
NONE
Os.49198.1.S1_at--90--3754Chr12:24142276..24142300 (25 bp)
CTCAAGGTCTGATCGAGCTTTGTAG
NONE
Os.49198.1.S1_at--1001--5913Chr12:24142290..24142314 (25 bp)
GAGCTTTGTAGAGGCGTTGATCCAT
NONE
Os.49198.1.S1_at--253--7353Chr12:24142325..24142349 (25 bp)
GTGAATCCATCCGTTGAGTTGAGAT
NONE
Os.49198.1.S1_at--594--171Chr04:34378742..34378766 (25 bp)
ATTTTTACCAATACTAGTTTCTGTG
LOC_Os04g58090
Os.49198.1.S1_at--391--1212Chr09:5818446..5818465 (20 bp)
AGTTTCTGTGAATCCATCCGTTTTT
NONE
Os.49198.1.S1_at--833--571Chr04:34378716..34378740 (25 bp)
ATCCATCCGTTTTTGGAAGCTCTGC
LOC_Os04g58090
Os.49198.1.S1_at--111--5411Chr04:34378701..34378725 (25 bp)
GAAGCTCTGCTACTCAGATTAGGTT
LOC_Os04g58090
Os.49198.1.S1_at--837--6914Chr12:24142448..24142471 (24 bp)
GTATGAGCACCGATGTATATATGAA
NONE
Os.49198.1.S1_at--542--4591Chr04:34378604..34378628 (25 bp)
GCGAATTTGTTCGTCTGGCATGCCC
LOC_Os04g58090
Os.49198.1.S1_at--1124--9451Chr04:34378591..34378615 (25 bp)
TCTGGCATGCCCCAACTGAAGCAAT
LOC_Os04g58090
Target Sequence 
GCGCGTGCCGATCCGCATCAAGTTCGGCNCCATCAAGCTGTGGAAGATGACCGGGAAGGCGACCTGCAACCTCGTCGTCG
ACAACCTCGTCGCCGGCAGGCAGATCCGCATCCGCTCCAACAGCTGCAGCTTCAAGCTCAAGGTCTGATCGAGCTTTGTA
GAGGCGTTGATCCATNCTCCATTNTCTGTGAATCCATCCGTTGAGTTGAGATTAGCAGGTGNTAGAGNCGNGTNATTTTT
ACATTTTTACCAATACTAGTTTCTGTGAATCCATCCGTTTTTGGAAGCTCTGCTACTCAGATTAGGTTTAATGTATGAGC
ACCGATGTATATATGAAAATGCATACGCGATGAATTTCTTTGAAAATGGCAATAAAGATGGCGAATTTGTTCGTCTGGCA
TGCCCCAACTGAAGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49198.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis