Browse Element(s) Details


Os.49341.1.S1_x_at

Description gb:AK105900.1
DB_XREF= gi:32991109
TID=Os.49341.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49341 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-204-F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-204-F08, full insert sequence.
FL= gb:AK105900.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1461411/11expressed protein
LOC_Os03g542205/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g14590OsAffx.6272.1.S1_at11/119+8635423..8640334Proteasome maturation factor UMP1 family protein
LOC_Os09g14600Os.11929.1.S1_at11/119+8643136..8645464peroxisomal membrane protein, putative, expressed
LOC_Os09g14610Os.50406.1.S1_x_at11/119+8645682..8653883RNase3 domain containing protein, expressed
LOC_Os09g14610Os.28186.2.S1_s_at11/119+8645682..8653883RNase3 domain containing protein, expressed
LOC_Os09g14610Os.28186.1.S1_s_at10/119+8645682..8653883RNase3 domain containing protein, expressed
LOC_Os09g14614Os.49341.1.S1_x_at11/119+8664791..8666872expressed protein
LOC_Os09g14614Os.49341.1.S1_at10/119+8664791..8666872expressed protein
LOC_Os09g14614Os.23317.1.S1_at4/119+8664791..8666872expressed protein
LOC_Os09g14614Os.51537.1.S1_at1/119+8664791..8666872expressed protein
LOC_Os09g14620NANA9+8670528..8673278retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g14630Os.9332.2.S1_at1/119+8676237..8679936transposon protein, putative, unclassified
LOC_Os09g14630Os.9332.2.S1_x_at1/119+8676237..8679936transposon protein, putative, unclassified
LOC_Os09g14640OsAffx.25156.5.S1_x_at2/119+8681707..8683764hypothetical protein
LOC_Os09g14640OsAffx.25156.4.S1_x_at2/119+8681707..8683764hypothetical protein
LOC_Os09g14640OsAffx.25156.1.S1_x_at2/119+8681707..8683764hypothetical protein
LOC_Os09g14650Os.11575.4.S1_x_at5/119+8684056..8684710transposon protein, putative, Pong sub-class
LOC_Os09g14650Os.11575.3.S1_x_at2/119+8684056..8684710transposon protein, putative, Pong sub-class
LOC_Os09g14660OsAffx.6274.1.S1_at11/119+8688905..8690567Protein kinase domain containing protein
LOC_Os09g14670OsAffx.29848.1.S1_at11/119+8691204..8696572Phosphoenolpyruvate carboxylase 2, putative, expressed
LOC_Os09g14670Os.5177.1.S1_s_at11/119+8691204..8696572Phosphoenolpyruvate carboxylase 2, putative, expressed
LOC_Os09g14670OsAffx.29848.1.S1_x_at11/119+8691204..8696572Phosphoenolpyruvate carboxylase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000904biological_processcellular morphogenesis during differentiation
GO:0006869biological_processlipid transport
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49341.1.S1_x_at--1155--5813Chr09:8665984..8666008 (25 bp)
GACCTCCCAGGTCTACAAGCCGGAT
LOC_Os09g14614
Os.49341.1.S1_x_at--35--9853Chr09:8665971..8665995 (25 bp)
TACAAGCCGGATTCATCATCGACCT
LOC_Os09g14614
Os.49341.1.S1_x_at--1013--5015Chr11:25772446..25772475 (25 bp)
GCAGGTGGATGCAGTACTCGCCCGT
NONE
Os.49341.1.S1_x_at--388--7633Chr09:8665658..8665679 (22 bp)
GGGACATTCCCATCTACAAAAGATC
LOC_Os09g14614
Os.49341.1.S1_x_at--1105--7352Chr09:8665053..8665077 (25 bp)
GTGAAATCTTACCACTGGACACAAG
LOC_Os09g14614
Os.49341.1.S1_x_at--268--8536Chr11:25771820..25771844 (25 bp)
TGGACACAAGCTCACTCTTCTTCAG
NONE
Os.49341.1.S1_x_at--159--9696Chr11:25771809..25771833 (25 bp)
TCACTCTTCTTCAGGACGTCAGGTT
NONE
Os.49341.1.S1_x_at--49--7116Chr11:25771792..25771816 (25 bp)
GTCAGGTTCCTTCATCACCCGGGTA
NONE
Os.49341.1.S1_x_at--521--2776Chr11:25771747..25771771 (25 bp)
AAGACCAGTTTCTTCTGTTTGTCCT
NONE
Os.49341.1.S1_x_at--680--3876Chr11:25771733..25771757 (25 bp)
CTGTTTGTCCTGTTTTTACTTGATT
NONE
Os.49341.1.S1_x_at--1--375Chr11:25771696..25771720 (25 bp)
ATCAATTTTTTAACATGCAATGGAA
NONE
Target Sequence 
GACCTCCCAGGTCTACAAGCCGGATTCATCATCGACCTCACCTCCGCAGGCCGGCTGCATCAACCCCCCACATCCCGGCC
TCCCACTAGACCACCGCCCCCATCCCGCGGCGGCCTTCGTCGTCGACTCCGCTTCCCCGTGCGCAGCCCACGTCCACGCC
AAAAGTCCGTCGCCTACGCCACATCTCGCGACTGGATCCGCTCCTCTCCGTCGATCTCCACCACGGTCCCTTTCGCGCCG
CACCGGAAGCTGGCCGCCAGTCCTCCGGTCGTCGCTGGATGCTGTCGGCAGGTGGATGCAGTACTCGCCCGTCTCCCCTC
CATCACTGAGGGACATTCCCATCTACAAAAGATCTGAAGTGAAATCTTACCACTGGACACAAGCTCACTCTTCTTCAGGA
CGTCAGGTTCCTTCATCACCCGGGTACTCTTCCCTACTGTGAAAGTAAGACCAGTTTCTTCTGTTTGTCCTGTTTTTACT
TGATTAATTTCTGTGATATCAATTTTTTAACATGCAATGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49341.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis