Browse Element(s) Details


Os.49378.1.S1_at

Description gb:AK073966.1
DB_XREF= gi:32983989
TID=Os.49378.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49378 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033072D16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033072D16, full insert sequence.
FL= gb:AK073966.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0305011/11ribosomal RNA adenine dimethylase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02990Os.16237.1.S1_at11/112+1173896..1177017expressed protein
LOC_Os02g03000OsAffx.24075.1.S1_at11/112+1178870..1181645division protein, putative, expressed
LOC_Os02g03010OsAffx.24076.1.S1_at11/112+1185112..1186338expressed protein
LOC_Os02g03010OsAffx.24076.1.S1_s_at11/112+1185112..1186338expressed protein
LOC_Os02g03020OsAffx.11871.1.S1_s_at11/112+1187234..1187897calcium-binding protein, putative, expressed
LOC_Os02g03030OsAffx.24077.1.S1_at10/112+1190846..1192461PHD finger family protein, putative
LOC_Os02g03040Os.14104.1.A1_a_at11/112+1193388..1197056Arginine/serine-rich splicing factor RSP41, putative, expressed
LOC_Os02g03050OsAffx.24078.1.S1_at11/112+1198657..1202304ribosomal RNA adenine dimethylase family protein, expressed
LOC_Os02g03050Os.49378.1.S1_at11/112+1198657..1202304ribosomal RNA adenine dimethylase family protein, expressed
LOC_Os02g03060Os.51694.1.S1_at11/112+1207635..1211225Cell division control protein 2 homolog 2, putative, expressed
LOC_Os02g03060Os.3428.2.S1_at11/112+1207635..1211225Cell division control protein 2 homolog 2, putative, expressed
LOC_Os02g03060Os.3428.1.S1_x_at10/112+1207635..1211225Cell division control protein 2 homolog 2, putative, expressed
LOC_Os02g03070Os.10080.1.S1_at10/112+1213995..1218034shrunken seed protein, putative, expressed
LOC_Os02g03070OsAffx.30891.1.S1_at1/112+1213995..1218034shrunken seed protein, putative, expressed
LOC_Os02g03080Os.48733.1.A1_at9/112+1219306..1222866Eukaryotic translation initiation factor 3 subunit 8, putative, expressed
LOC_Os02g03080Os.48081.1.S1_at1/112+1219306..1222866Eukaryotic translation initiation factor 3 subunit 8, putative, expressed
LOC_Os02g03090OsAffx.24079.1.S1_at11/112+1223725..1226826expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009409biological_processresponse to cold
GO:0016422molecular_functionmRNA (2'-O-methyladenosine-N6-)-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49378.1.S1_at--169--6511Chr02:1200926..1200950 (25 bp)
GATATGTGGATAATCCTATTGCATA
LOC_Os02g03050
Os.49378.1.S1_at--416--3711Chr02:1200891..1200915 (25 bp)
CTAGAAATGCGAATGTGATATGGAC
LOC_Os02g03050
Os.49378.1.S1_at--24--6511Chr02:1200875..1200899 (25 bp)
GATATGGACAATATGCTGTTGCCTT
LOC_Os02g03050
Os.49378.1.S1_at--1144--4731Chr02:1200861..1200885 (25 bp)
GCTGTTGCCTTTACCAAAATCTAGT
LOC_Os02g03050
Os.49378.1.S1_at--939--4371Chr02:1200848..1200872 (25 bp)
CCAAAATCTAGTCTTCATCTGATGT
LOC_Os02g03050
Os.49378.1.S1_at--30--4231Chr02:1199362..1199382 (21 bp)
CCGAAGGTTGATGGTGCTGTTATAA
LOC_Os02g03050
Os.49378.1.S1_at--333--7771Chr02:1199350..1199374 (25 bp)
GGTGCTGTTATAAGCTTTAAGCTAA
LOC_Os02g03050
Os.49378.1.S1_at--17--7671Chr02:1199316..1199340 (25 bp)
GGGATTATCCACCAGTTGGTTCTCA
LOC_Os02g03050
Os.49378.1.S1_at--835--3291Chr02:1199307..1199331 (25 bp)
CACCAGTTGGTTCTCACAAAGGTTT
LOC_Os02g03050
Os.49378.1.S1_at--31--3311Chr02:1199296..1199317 (22 bp)
CACAAAGGTTTCTTTTCAATGGTGA
LOC_Os02g03050
Os.49378.1.S1_at--1053--9551Chr02:1199177..1199307 (25 bp)
TCTTTTCAATGGTGAACTCTGCTTT
LOC_Os02g03050
Target Sequence 
GATATGTGGATAATCCTATTGCATATTTTATGAAACTAGAAATGCGAATGTGATATGGACAATATGCTGTTGCCTTTACC
AAAATCTAGTCTTCATCTGATGTGTAATGATTTTAAGAATATAATGCAGATCATTGAAGAAGATATCACAAAATTTAATG
TCCGCTCCCATTTTCTTCCTTTCCTGGAGGAAAAATCCCATCACACGAGAAAATATGCCAAGGTGGTGTCAAATTTACCA
TTCAATGTAAGTACTGAAGTTGTCAAACTTCTTCTCCCAATGGGAGATGTCTTTTCTGTCATGGTGCTTTTGCTTCAGGA
TGAAACGGCATTGCGCTTTGCAGATGCTTCAATACAAACACCAGAGTACCGACCTATCAATGTGTTTGTGAATTTCTACT
CAGAACCAGAATACAAGTTCAAAGTTGAGAGGACAAATTTTTTCCCTCAACCGAAGGTTGATGGTGCTGTTATAAGCTTT
AAGCTAAAGAATTCAGGGGATTATCCACCAGTTGGTTCTCACAAAGGTTTCTTTTCAATGGTGAACTCTGCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49378.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis