Browse Element(s) Details


Os.49395.1.S1_at

Description gb:AK068101.1
DB_XREF= gi:32978119
TID=Os.49395.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49395 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013129K10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013129K10, full insert sequence.
FL= gb:AK068101.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g626807/11glycohydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62630Os.26040.1.S1_at11/113+35383358..35385296ribosomal protein S6 family protein, putative, expressed
LOC_Os03g62640Os.11748.2.S2_a_at11/113+35385374..35391403RNA-binding protein Luc7-like 2, putative, expressed
LOC_Os03g62640Os.11748.2.S2_at11/113+35385374..35391403RNA-binding protein Luc7-like 2, putative, expressed
LOC_Os03g62640Os.11748.2.S1_a_at10/113+35385374..35391403RNA-binding protein Luc7-like 2, putative, expressed
LOC_Os03g62650Os.25061.1.S1_at11/113+35392356..35399319Ion channel DMI1-like, chloroplast precursor, putative, expressed
LOC_Os03g62660Os.10899.1.S1_at11/113+35401110..35405320transposon protein, putative, unclassified, expressed
LOC_Os03g62670Os.27628.2.S1_a_at11/113+35406586..35408745Thiopurine S-methyltransferase family protein, expressed
LOC_Os03g62670Os.27628.1.S1_at11/113+35406586..35408745Thiopurine S-methyltransferase family protein, expressed
LOC_Os03g62680Os.49395.1.S1_at7/113+35409217..35412888glycohydrolase family protein, expressed
LOC_Os03g62690Os.50857.1.S2_at11/113+35413245..35418862pentatricopeptide, putative, expressed
LOC_Os03g62690Os.50857.1.S1_at11/113+35413245..35418862pentatricopeptide, putative, expressed
LOC_Os03g62700Os.10159.1.S1_at11/113+35419520..35425280Protein kinase domain containing protein, expressed
LOC_Os03g62710NANA3+35427237..35428889BED zinc finger family protein
LOC_Os03g62720Os.40400.1.S1_at11/113+35433240..354366933' exoribonuclease family, domain 1 containing protein, expressed
LOC_Os03g62720Os.47354.1.A1_at1/113+35433240..354366933' exoribonuclease family, domain 1 containing protein, expressed
LOC_Os03g62730Os.8707.1.S1_at11/113+35437810..35445747transposon protein, putative, unclassified, expressed
LOC_Os03g62730Os.8707.1.S2_at11/113+35437810..35445747transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004649molecular_functionpoly(ADP-ribose) glycohydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49395.1.S1_at--710--3871Chr03:35410366..35410753 (25 bp)
CTGTGCAAAGCTTGTCCAGGATTTA
LOC_Os03g62680
Os.49395.1.S1_at--1089--2551Chr03:35410329..35410353 (25 bp)
AACTGTCCAAGTGTCATTCCTGATG
LOC_Os03g62680
Os.49395.1.S1_at--603--831Chr03:35410137..35410252 (25 bp)
ATGGATTGCTGCATCACAGGCACTC
LOC_Os03g62680
Os.49395.1.S1_at--107--2131Chr03:35410122..35410145 (24 bp)
ACAGGCACTCCGATCTTTTATTAAC
LOC_Os03g62680
Os.49395.1.S1_at--865--7371Chr03:35409357..35409381 (25 bp)
GTGACCCAGTGGATATTGCGCCATA
LOC_Os03g62680
Os.49395.1.S1_at--627--7511Chr03:35409300..35409324 (25 bp)
GTGGAGTATTCATCCCAGAGGCTAA
LOC_Os03g62680
Os.49395.1.S1_at--427--9811Chr03:35409251..35409275 (25 bp)
TAACATGGCTACTTCCCAAGGACAT
LOC_Os03g62680
Os.49395.1.S1_at--5--3511Chr03:35409205..35409229 (25 bp)
CATGTGTGAATAGCCCTTTGTTTAA
NONE
Os.49395.1.S1_at--798--5531Chr03:35409129..35409153 (25 bp)
GAAACACCGTTTGTTGTGGCCTTGT
NONE
Os.49395.1.S1_at--515--6451Chr03:35409096..35409120 (25 bp)
GATCAACTTGTTGCGCCTGTATGGC
NONE
Os.49395.1.S1_at--1043--3031Chr03:35409071..35409095 (25 bp)
AATCCTTACCTGCTTCTGATGGCAG
NONE
Target Sequence 
CTGTGCAAAGCTTGTCCAGGATTTAAATACAAAGGATAACTGTCCAAGTGTCATTCCTGATGAATGCATAGGAGTTTCAA
CTGGAAACTGGGGTTGCGGGGCTTTTGGTGGAAACCCTGAAATCAAGAGCATGATTCAATGGATTGCTGCATCACAGGCA
CTCCGATCTTTTATTAACTACTACACTTTTGAGTCCGAATCACTGAAAAGATTAGAAGAGGTGACCCAGTGGATATTGCG
CCATAGGTGGACGGTTGGCGAGTTGTGGGACATGCTTGTGGAGTATTCATCCCAGAGGCTAAGAGGAGACACCAATGAGG
GCTTTTTAACATGGCTACTTCCCAAGGACATCCCCAATGGTGATGTAGATTACATGTGTGAATAGCCCTTTGTTTAAATC
AAGGAAACCGACCTAGGAAAAATGTGCATTGCTTGTTGGAAGCAGACTGAAACACCGTTTGTTGTGGCCTTGTGGCTGTG
AGATCAACTTGTTGCGCCTGTATGGCAATCCTTACCTGCTTCTGATGGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49395.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis