Browse Element(s) Details


Os.49448.1.S1_at

Description gb:AK101121.1
DB_XREF= gi:32986330
TID=Os.49448.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49448 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033025J04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033025J04, full insert sequence.
FL= gb:AK101121.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7221011/11early-responsive to dehydration protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72140Os.22957.1.S1_at11/111+42170858..42172179Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g72150OsAffx.24011.1.S1_at11/111+42173266..42174214glutathione S-transferase, putative, expressed
LOC_Os01g72160Os.52054.1.S1_at11/111+42174554..42175926Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g72170Os.11303.1.S1_at11/111+42180867..42181727Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g72170Os.11303.1.S1_s_at11/111+42180867..42181727Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g72190Os.24603.1.A1_at11/111+42188411..42190544expressed protein
LOC_Os01g72200Os.23711.1.S1_x_at11/111+42191468..42193395expressed protein
LOC_Os01g72200Os.23711.1.S1_at10/111+42191468..42193395expressed protein
LOC_Os01g72200Os.15132.1.S1_x_at3/111+42191468..42193395expressed protein
LOC_Os01g72210Os.49448.1.S1_at11/111+42196797..42200759early-responsive to dehydration protein, putative, expressed
LOC_Os01g72220Os.16005.1.S1_at2/111+42201179..42207376WD-repeat protein 33, putative, expressed
LOC_Os01g72230Os.24943.1.S1_at11/111+42209376..42213258zinc finger and C2 domain protein, putative, expressed
LOC_Os01g72240Os.4468.1.S1_at11/111+42213916..42217699Uridine 5'-monophosphate synthase, putative, expressed
LOC_Os01g72240Os.14861.2.S1_at1/111+42213916..42217699Uridine 5'-monophosphate synthase, putative, expressed
LOC_Os01g72250Os.3769.1.S1_a_at11/111+42219537..42223089Uridine 5'-monophosphate synthase, putative, expressed
LOC_Os01g72260NANA1+42223488..42225122Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49448.1.S1_at--908--10231Chr01:42200055..42200079 (25 bp)
TATTGGCCCAATATTCATCGCTACA
LOC_Os01g72210
Os.49448.1.S1_at--866--3111Chr01:42200064..42200088 (25 bp)
AATATTCATCGCTACATCTTCCTTT
LOC_Os01g72210
Os.49448.1.S1_at--1136--3671Chr01:42200085..42200109 (25 bp)
CTTTCGGTCACACTCATGCAAATTA
LOC_Os01g72210
Os.49448.1.S1_at--239--6711Chr01:42200148..42200172 (25 bp)
GTTCCCTTGCTTGTGTCAACCATTT
LOC_Os01g72210
Os.49448.1.S1_at--49--9931Chr01:42200184..42200208 (25 bp)
TACTGCAAGGTTCGGTTTCTTCCAA
LOC_Os01g72210
Os.49448.1.S1_at--715--1331Chr01:42200396..42200420 (25 bp)
AGAGGTGACCTGGACCATGCCATTA
LOC_Os01g72210
Os.49448.1.S1_at--952--10451Chr01:42200418..42200442 (25 bp)
TTAGCGCCTATAAGCCACCATGGAT
LOC_Os01g72210
Os.49448.1.S1_at--69--10591Chr01:42200456..42200480 (25 bp)
TTCTCTCCAGATTGTAGTTCGGTAC
LOC_Os01g72210
Os.49448.1.S1_at--940--9431Chr01:42200474..42200498 (25 bp)
TCGGTACAACCTTTGATCCGTTCTG
LOC_Os01g72210
Os.49448.1.S1_at--968--5611Chr01:42200514..42200538 (25 bp)
GACACCGCTAGCTTGGTATTGGTTT
LOC_Os01g72210
Os.49448.1.S1_at--75--3151Chr01:42200661..42200685 (25 bp)
AATTACCACGCTTTGGCTCAGTTTA
LOC_Os01g72210
Target Sequence 
TATTGGCCCAATATTCATCGCTACATCTTCCTTTCGGTCACACTCATGCAAATTACAATGNNNNNNNNNNNNNNNCTGAA
GTCGAAACCGGGGGCTTCATTCGCCACGGTTCCCTTGCTTGTGTCAACCATTTTGTTCAATGAGTACTGCAAGGTTCGGT
TTCTTCCAACNTTCCTTCNTCGACCGGTTCAGGTTGCCAAGGAGAATGACGACCTTAATGAAGCTGAGGGGATGAGAGGT
GACCTGGACCATGCCATTAGCGCCTATAAGCCACCATGGATGCGCCCGACGAACTTCTCTCCAGATTGTAGTTCGGTACA
ACCTTTGATCCGTTCTGTATAGTAGTGTTGGTGACACCGCTAGCTTGGTATTGGTTTTAGTNCTGTTACATAATAAGAAC
CAGGCAAATTTTNCGTGTGAAGTTTGGCTGTNGGCAGATATAAGCTCGCATATAACAATGGCATATGCTTTTTATGTGCT
CAAGGAGTCGNTTTACATGTAATTACCACGCTTTGGCTCAGTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49448.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis