Browse Element(s) Details


Os.4947.1.S1_at

Description gb:AK121245.1
DB_XREF= gi:37990868
TID=Os.4947.1
CNT=118
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.4947 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBb0021A09.5 (OSJNBb0021A09.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023099G09, full insert sequence.
FL= gb:AK065226.1 gb:AK062151.1 gb:AK121245.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5352011/11reticulon family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53460Os.25227.2.S1_at11/111+31039021..31040692UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g53450Os.25227.1.S1_x_at11/111+31039261..31044535aminotransferase, classes I and II family protein, expressed
LOC_Os01g53450Os.41946.1.S1_at11/111+31039261..31044535aminotransferase, classes I and II family protein, expressed
LOC_Os01g53450Os.25227.1.S1_s_at11/111+31039261..31044535aminotransferase, classes I and II family protein, expressed
LOC_Os01g53450Os.41946.1.S1_s_at6/111+31039261..31044535aminotransferase, classes I and II family protein, expressed
LOC_Os01g53470Os.28576.1.S1_at11/111+31045778..31046800Harpin-induced protein 1 containing protein, expressed
LOC_Os01g53480NANA1+31047595..31050103retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g53500Os.32371.1.S1_at11/111+31057165..31058185Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g53500Os.32371.2.S1_x_at11/111+31057165..31058185Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g53520Os.4947.1.S1_at11/111+31065548..31067572reticulon family protein, putative, expressed
LOC_Os01g53530OsAffx.11588.1.S1_at11/111+31072286..31072719hypothetical protein
LOC_Os01g53530Os.38764.1.S1_x_at8/111+31072286..31072719hypothetical protein
LOC_Os01g53540OsAffx.23775.1.S1_at11/111+31074365..31074583hypothetical protein
LOC_Os01g53550Os.30828.1.S1_at7/111+31075148..31076022expressed protein
LOC_Os01g53560OsAffx.11589.1.S1_x_at10/111+31080145..31087800phosphoesterase, putative, expressed
LOC_Os01g53560OsAffx.11589.2.S1_at10/111+31080145..31087800phosphoesterase, putative, expressed
LOC_Os01g53560OsAffx.11589.1.S1_at5/111+31080145..31087800phosphoesterase, putative, expressed
LOC_Os01g53570Os.32118.1.S1_x_at11/111+31090937..31093436Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os01g53570Os.32118.1.S1_at11/111+31090937..31093436Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os01g53570Os.32118.2.S1_x_at11/111+31090937..31093436Uncharacterized protein family UPF0005 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005783cellular_componentendoplasmic reticulum
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4947.1.S1_at--638--3571Chr01:31066971..31066992 (22 bp)
CATAGTTTTTGTGGCGCTCTACACT
LOC_Os01g53520
Os.4947.1.S1_at--67--9871Chr01:31066987..31067011 (25 bp)
TACACTGTGCCAGTACTGTATGAGA
LOC_Os01g53520
Os.4947.1.S1_at--981--2731Chr01:31067062..31067086 (25 bp)
AAGAAGTACTATGCCCTCTTTGAAG
LOC_Os01g53520
Os.4947.1.S1_at--1033--6571Chr01:31067103..31067127 (25 bp)
GATTCCCAAGGGTCCTTTGAAAGAT
LOC_Os01g53520
Os.4947.1.S1_at--672--5171Chr01:31067157..31067181 (25 bp)
GCAATGAATCAGCAGCCGTGTTAAT
LOC_Os01g53520
Os.4947.1.S1_at--1045--7411Chr01:31067174..31067198 (25 bp)
GTGTTAATCACTATTGCTCGACTTT
LOC_Os01g53520
Os.4947.1.S1_at--730--10731Chr01:31067254..31067278 (25 bp)
TTGCATGGGCAGTTCTAGCCTTCTA
LOC_Os01g53520
Os.4947.1.S1_at--1071--5031Chr01:31067305..31067329 (25 bp)
GCAGATGGTTGTGGCGTGCAATCTT
LOC_Os01g53520
Os.4947.1.S1_at--1024--611Chr01:31067345..31067369 (25 bp)
ATGCTGGCTCAAATCTGCTGATCTT
LOC_Os01g53520
Os.4947.1.S1_at--127--831Chr01:31067429..31067453 (25 bp)
ATGGTACTATCAATGCCCCAAGTGA
LOC_Os01g53520
Os.4947.1.S1_at--251--2251Chr01:31067544..31067568 (25 bp)
AAATCTGGTAATCTGGTCCGTCTTC
LOC_Os01g53520
Target Sequence 
CATAGTTTTTGTGGCGCTCTACACTGTGCCAGTACTGTATGAGAAGTATGAGGACAAGGTTGATGCTTTTGGTGAGAAGG
CTGAGATTGAATTTAAGAAGTACTATGCCCTCTTTGAAGAGAAATGCCTATCGAAGATTCCCAAGGGTCCTTTGAAAGAT
AAGAAGCACTAGATTAGTAGAAGGTACCTGCAATGAATCAGCAGCCGTGTTAATCACTATTGCTCGACTTTTATTTTGGA
GGATGGTTATGAGTCCTTGTGTGTGTGTCTAGTTGATAATATATACTTGCATGGGCAGTTCTAGCCTTCTAGCATGGCTG
ATAGTTGTTATGTGGTGGCAGATGGTTGTGGCGTGCAATCTTTTGTGGAGTTGAGCAATGCTGGCTCAAATCTGCTGATC
TTTTCCCCCCTTTCATGTTCAACTTTAAGCATAGTTACTATATCTGGATGCTAGAAGTATTATGGTACTATCAATGCCCC
AAGTGAACCTTGTGATATATTGTTTCATGGCTTTATGTTTTTTACCGGTTTTAGGCTAGTGGGATGTATTATGGTATTAC
TTTGTTTGCTGATATGAAATCTGGTAATCTGGTCCGTCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4947.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis