Browse Element(s) Details

Os.49572.1.A1_at

Description

gb:AK108107.1
DB_XREF= gi:32993316
TID=Os.49572.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49572 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-139-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-139-B08, full insert sequence.
FL= gb:AK108107.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g11090	11/11	esterase, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g11040	Os.27377.1.S1_at	10/11	6	+	5783168..5787999	expressed protein
LOC_Os06g11050	OsAffx.15366.1.S1_at	9/11	6	+	5790467..5794811	Cyclin-dependent kinase inhibitor family protein
LOC_Os06g11050	Os.54550.1.S1_at	1/11	6	+	5790467..5794811	Cyclin-dependent kinase inhibitor family protein
LOC_Os06g11060	Os.18657.1.S1_at	11/11	6	+	5799189..5799850	expressed protein
LOC_Os06g11070	Os.23461.1.A1_at	11/11	6	+	5806277..5810130	expressed protein
LOC_Os06g11070	OsAffx.4796.1.S1_s_at	11/11	6	+	5806277..5810130	expressed protein
LOC_Os06g11080	OsAffx.4797.1.S1_at	11/11	6	+	5811592..5812001	hypothetical protein
LOC_Os06g11090	Os.49572.1.A1_at	11/11	6	+	5812498..5814197	esterase, putative, expressed
LOC_Os06g11100	OsAffx.22063.1.S1_at	1/11	6	+	5816259..5819852	retrotransposon protein, putative, unclassified
LOC_Os06g11110	OsAffx.20729.1.S1_x_at	4/11	6	+	5820541..5826468	transposon protein, putative, unclassified
LOC_Os06g11110	OsAffx.21171.4.S1_x_at	2/11	6	+	5820541..5826468	transposon protein, putative, unclassified
LOC_Os06g11110	OsAffx.21171.3.S1_x_at	1/11	6	+	5820541..5826468	transposon protein, putative, unclassified
LOC_Os06g11110	OsAffx.2022.1.S1_at	1/11	6	+	5820541..5826468	transposon protein, putative, unclassified
LOC_Os06g11110	OsAffx.21171.4.S1_at	1/11	6	+	5820541..5826468	transposon protein, putative, unclassified
LOC_Os06g11120	OsAffx.4798.1.S1_x_at	10/11	6	+	5829907..5832224	hypothetical protein
LOC_Os06g11120	OsAffx.24637.2.S1_x_at	1/11	6	+	5829907..5832224	hypothetical protein
LOC_Os06g11120	Os.50619.1.S1_x_at	1/11	6	+	5829907..5832224	hypothetical protein
LOC_Os06g11120	OsAffx.13605.1.S1_x_at	1/11	6	+	5829907..5832224	hypothetical protein
LOC_Os06g11120	Os.50619.1.S1_at	1/11	6	+	5829907..5832224	hypothetical protein
LOC_Os06g11130	Os.21839.1.S1_at	9/11	6	+	5834563..5836107	2-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os06g11140	Os.49084.1.S1_at	10/11	6	+	5839159..5843518	NADH dehydrogenase, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.49572.1.A1_at--1019--829	1	Chr06:5813637..5813661 (25 bp)	GGCTTTGTCGTTGGCTTAGGATCGA	LOC_Os06g11090
Os.49572.1.A1_at--524--227	1	Chr06:5813691..5813715 (25 bp)	AAATCGATGCACTCCAAATGCCGAG	LOC_Os06g11090
Os.49572.1.A1_at--1052--255	1	Chr06:5813786..5813810 (25 bp)	AACTGGTTGAGCAGGTGGTCGCTAT	LOC_Os06g11090
Os.49572.1.A1_at--91--751	1	Chr06:5813800..5813824 (25 bp)	GTGGTCGCTATTGCCTGCTAGTACT	LOC_Os06g11090
Os.49572.1.A1_at--568--301	1	Chr06:5813878..5813902 (25 bp)	AATGAATCTGGACGTCTCACATCTG	LOC_Os06g11090
Os.49572.1.A1_at--775--811	1	Chr06:5813887..5813911 (25 bp)	GGACGTCTCACATCTGTCCAAAATC	LOC_Os06g11090
Os.49572.1.A1_at--543--765	1	Chr06:5813931..5813955 (25 bp)	GGGAGTACTACTACCAATTGTTGAC	LOC_Os06g11090
Os.49572.1.A1_at--265--1003	1	Chr06:5814057..5814081 (25 bp)	TAGAATTAGACTGGGTCCTCTCTCC	LOC_Os06g11090
Os.49572.1.A1_at--707--863	1	Chr06:5814068..5814092 (25 bp)	TGGGTCCTCTCTCCATCTATATAAG	LOC_Os06g11090
Os.49572.1.A1_at--1126--9	1	Chr06:5814109..5814133 (25 bp)	ATTCTAACTGATAATACCCCGCGTG	LOC_Os06g11090
Os.49572.1.A1_at--726--741	1	Chr06:5814131..5814155 (25 bp)	GTGTTGTTGCGGGACTCAATGATTA	LOC_Os06g11090

Target Sequence

GGCTTTGTCGTTGGCTTAGGATCGAGTAGCGATGTGATGGAATGAATTTCTATAAAATCGATGCACTCCAAATGCCGAGT
GATTTGGCTATGATTTGAATTTGCGATAGATGAATAGATGATGGAGACATGGAGTTGAGCAGGGGAAAAAACTGGTTGAG
CAGGTGGTCGCTATTGCCTGCTAGTACTCCCTCAGTCCCATAATACAAGGGATTATGGGTAGATGTGACACATCCTAATA
CAATGAATCTGGACGTCTCACATCTGTCCAAAATCCCTTATATTATGGGACGGAGGGAGTACTACTACCAATTGTTGACT
TTGTGAATCTAATCAAGTTCAGAGAGCCAACTACAAGTATATGTCATGGGTAGTGGGCCGAGGGATCGAGGCCCTAAGGA
TAAGGATAGAGTTTGTTGGATAGAATTAGACTGGGTCCTCTCTCCATCTATATAAGGATGGATTGTATCATCATTCTAAC
TGATAATACCCCGCGTGTTGTTGCGGGACTCAATGATTA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis