Browse Element(s) Details


Os.49621.1.S1_at

Description gb:AK060367.1
DB_XREF= gi:32970385
TID=Os.49621.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49621 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033123O09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-009-A08, full insert sequence.
FL= gb:AK060367.1 gb:AK103253.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2559011/11Tyrosine decarboxylase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g25550OsAffx.27789.3.S1_s_at11/117+14639926..14644366hypothetical protein
LOC_Os07g25550OsAffx.27789.2.S1_x_at10/117+14639926..14644366hypothetical protein
LOC_Os07g25550OsAffx.27789.1.S1_at1/117+14639926..14644366hypothetical protein
LOC_Os07g25560Os.27639.1.S1_x_at2/117+14650824..14654074retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g25570OsAffx.28581.1.S1_at10/117+14656853..14659257hypothetical protein
LOC_Os07g25570OsAffx.21066.1.S1_x_at2/117+14656853..14659257hypothetical protein
LOC_Os07g25580NANA7+14662211..14662519hypothetical protein
LOC_Os07g25590Os.49621.1.S1_at11/117+14666320..14675013Tyrosine decarboxylase 1, putative, expressed
LOC_Os07g25600OsAffx.28583.1.S1_at11/117+14675821..14676258hypothetical protein
LOC_Os07g25610OsAffx.16407.2.S1_x_at1/117+14678204..14678829hypothetical protein
LOC_Os07g25620NANA7+14681982..14686254retrotransposon protein, putative, unclassified
LOC_Os07g25630OsAffx.16451.1.A1_x_at3/117+14689776..14696696retrotransposon protein, putative, unclassified
LOC_Os07g25630Os.45161.1.A1_x_at2/117+14689776..14696696retrotransposon protein, putative, unclassified
LOC_Os07g25630OsAffx.22699.1.S1_x_at2/117+14689776..14696696retrotransposon protein, putative, unclassified
LOC_Os07g25630OsAffx.16451.1.A1_at1/117+14689776..14696696retrotransposon protein, putative, unclassified
LOC_Os07g25640NANA7+14697164..14700360hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006520biological_processamino acid metabolism
GO:0004837molecular_functiontyrosine decarboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49621.1.S1_at--677--7851Chr07:14674353..14674377 (25 bp)
GGTAGTGACTCCAAGGACTTTTTCA
LOC_Os07g25590
Os.49621.1.S1_at--777--10291Chr07:14674373..14674397 (25 bp)
TTTCACTTGTTTGTTTCCGACTTGT
LOC_Os07g25590
Os.49621.1.S1_at--892--4451Chr07:14674398..14674422 (25 bp)
GCCTCCCACTTCTGACCATGAAAAT
LOC_Os07g25590
Os.49621.1.S1_at--796--8151Chr07:14674468..14674492 (25 bp)
GGAAAGATCTTCCTATCTCACACGG
LOC_Os07g25590
Os.49621.1.S1_at--263--4111Chr07:14674647..14674671 (25 bp)
CGACACGTGGATGCCGCTTGGAAGC
LOC_Os07g25590
Os.49621.1.S1_at--295--7351Chr07:14674720..14674744 (25 bp)
GTGAATACCGCTCACTGATTCAGCT
LOC_Os07g25590
Os.49621.1.S1_at--421--1971Chr07:14674733..14674757 (25 bp)
ACTGATTCAGCTCATTGTTTGCCCT
LOC_Os07g25590
Os.49621.1.S1_at--214--3611Chr07:14674745..14674769 (25 bp)
CATTGTTTGCCCTTCGAGTATTGAA
LOC_Os07g25590
Os.49621.1.S1_at--358--9391Chr07:14674884..14674908 (25 bp)
TCGTTTGATCGACCTGCAATTTTTT
LOC_Os07g25590
Os.49621.1.S1_at--466--6651Chr07:14674913..14674937 (25 bp)
GTTGATATTAAACTCCCTGCATTAT
LOC_Os07g25590
Os.49621.1.S1_at--1027--10371Chr07:14674984..14675008 (25 bp)
TTTTACCAAGATTACGCAGCTCCCC
LOC_Os07g25590
Target Sequence 
GGTAGTGACTCCAAGGACTTTTTCACTTGTTTGTTTCCGACTTGTGCCTCCCACTTCTGACCATGAAAATGGACGTAAAT
TGAATTACGATATGATGGATGGTGTAAATTCAAGTGGAAAGATCTTCCTATCTCACACGGTTCTTTNCAGGTAAGTTNCG
TNCTTGNAGATTTGCNAGTAGGNAGCGCCANCTNACANGAGGAGCGACACGTGGATGCCGCTTGGAAGCTTNCTACGAGA
TGAGGCCACCAAGGTCTTGGGGAAAATGGTGTAGATAAGTGAATACCGCTCACTGATTCAGCTCATTGTTTGCCCTTCGA
GTATTGAAGGTGCCAAAGTTCATACAAAAAGTTTCTGTTAAGGACAATACACGATAGCATAATTTATTCAGTTGTGAAAC
AGAAATACTGAATACTTTCTATGATTCTTTTAGTGGGTTAGGTCGTTTGATCGACCTGCAATTTTTTTCGAGTTGATATT
AAACTCCCTGCATTATGGATGGTAGTGTGAGGTGGCATGCAGTATAACATTTAACATACAAATTTTACCAAGATTACGCA
GCTCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49621.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis