Browse Element(s) Details


Os.49624.1.S1_at

Description gb:AK065418.1
DB_XREF= gi:32975436
TID=Os.49624.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49624 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-310-D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013023J24, full insert sequence.
FL= gb:AK104635.1 gb:AK065418.1 gb:AK104172.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3352011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33480NANA5+19584292..19587277retrotransposon protein, putative, unclassified
LOC_Os05g33490OsAffx.10596.1.S1_x_at1/115+19588029..19594222retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g33500Os.4917.1.S1_at11/115+19595043..19596957mitochondrial transcription termination factor family protein, putative, expressed
LOC_Os05g33510Os.5331.1.S1_at10/115+19598629..19601454expressed protein
LOC_Os05g33514Os.55269.1.S1_at9/115+19601640..19603680expressed protein
LOC_Os05g33520Os.49624.1.S1_at11/115+19608206..19611145expressed protein
LOC_Os05g33530OsAffx.14940.1.S1_x_at5/115+19614656..19615075hypothetical protein
LOC_Os05g33539NANA5+19616516..19616952NA
LOC_Os05g33550Os.12055.1.S1_at11/115+19619639..19621802methyl-binding domain protein MBD101, putative, expressed
LOC_Os05g33550OsAffx.27139.1.S1_at8/115+19619639..19621802methyl-binding domain protein MBD101, putative, expressed
LOC_Os05g33560NANA5+19631580..19632224hypothetical protein
LOC_Os05g33570Os.7144.2.S1_a_at11/115+19635365..19654558Pyruvate, phosphate dikinase, chloroplast precursor, putative, expressed
LOC_Os05g33570OsAffx.27140.1.S1_at9/115+19635365..19654558Pyruvate, phosphate dikinase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49624.1.S1_at--168--8611Chr05:19608866..19608890 (25 bp)
TGGTCCCTCTAATCAACGTCATTAT
LOC_Os05g33520
Os.49624.1.S1_at--934--7131Chr05:19608849..19608873 (25 bp)
GTCATTATCCCGTTCTTCGTGAAAT
LOC_Os05g33520
Os.49624.1.S1_at--1008--5571Chr05:19608829..19608853 (25 bp)
GAAATCCTTCGCTGTTGTCTGGTCA
LOC_Os05g33520
Os.49624.1.S1_at--143--7831Chr05:19608809..19608833 (25 bp)
GGTCAGCAGATACGGTTGCATTCTT
LOC_Os05g33520
Os.49624.1.S1_at--454--1551Chr05:19608680..19608704 (25 bp)
AGCTTGGATGGCTGCAACGGTCAGA
LOC_Os05g33520
Os.49624.1.S1_at--311--151Chr05:19608601..19608625 (25 bp)
ATTTTGGAGGGCACGCTACATGCGA
LOC_Os05g33520
Os.49624.1.S1_at--534--10451Chr05:19608560..19608584 (25 bp)
TTAGTTTCGTGTACATCCATGGAGT
LOC_Os05g33520
Os.49624.1.S1_at--328--5391Chr05:19608530..19608554 (25 bp)
GAAGCTTGCTATGTAGATGTACCTT
LOC_Os05g33520
Os.49624.1.S1_at--518--8951Chr05:19608486..19608510 (25 bp)
TGACTAGGAACTGGGCATCTCTCAA
LOC_Os05g33520
Os.49624.1.S1_at--1003--1271Chr05:19608442..19608466 (25 bp)
AGATCATATATGTCTGCGCGCTGGC
LOC_Os05g33520
Os.49624.1.S1_at--8--5551Chr05:19608415..19608439 (25 bp)
GAAACGGTTGCCAATTGCATCTGCT
LOC_Os05g33520
Target Sequence 
TGGTCCCTCTAATCAACGTCATTATCCCGTTCTTCGTGAAATCCTTCGCTGTTGTCTGGTCAGCAGATACGGTTGCATTC
TTTGTGATGTATGCTTGGAAGCTTGGATGGCTGCAACGGTCAGAGTGAACAATTTCCTGAACGAAGGAGCATTTGAACTG
CAAATTTTGCCTAAGTGAATTTTGGAGGGCACGCTACATGCGATGAATTTTTCCTAGATTTAGTTTCGTGTACATCCATG
GAGTGTAAAGAAGCTTGCTATGTAGATGTACCTTAAATTGTCAACATTAGTGTTGACTAGGAACTGGGCATCTCTCAACC
TGTTATGGTTTCCCAGTAGATCATATATGTCTGCGCGCTGGCATGAAACGGTTGCCAATTGCATCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49624.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis