Browse Element(s) Details


Os.49638.1.S1_at

Description gb:AK109515.1
DB_XREF= gi:32994724
TID=Os.49638.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49638 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-107-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-107-D06, full insert sequence.
FL= gb:AK121897.1 gb:AK109515.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0120011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g01140OsAffx.4689.1.S1_at10/116+120758..123012hypothetical protein
LOC_Os06g01150OsAffx.15208.1.S1_at11/116+125232..126339hypothetical protein
LOC_Os06g01160OsAffx.4690.1.S1_at11/116+129355..129738hypothetical protein
LOC_Os06g01170Os.39009.1.S1_at11/116+130104..137354PHD-finger family protein, expressed
LOC_Os06g01180Os.18360.1.S1_at11/116+137513..138803expressed protein
LOC_Os06g01190NANA6+139965..140255hypothetical protein
LOC_Os06g01200Os.49638.1.S1_at11/116+141315..145642Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g01210Os.7915.1.S1_a_at11/116+148387..149246Plastocyanin, chloroplast precursor, putative, expressed
LOC_Os06g01220OsAffx.15209.1.S1_at11/116+149985..151936hypothetical protein
LOC_Os06g01230Os.49429.1.S1_at11/116+152418..155618No apical meristem protein, expressed
LOC_Os06g01240OsAffx.27415.1.S1_at11/116+160576..160995hypothetical protein
LOC_Os06g01250Os.53717.1.S1_at11/116+162205..164320Cytochrome P450 family protein, expressed
LOC_Os06g01260Os.47875.2.S1_at11/116+166364..173331phytochelatin synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49638.1.S1_at--531--3371Chr06:142234..142258 (25 bp)
CACCACCTAGGCTGGCTGAGAGAAG
LOC_Os06g01200
Os.49638.1.S1_at--1--8371Chr06:142307..142331 (25 bp)
GGCGGAGAGCAGCAATCCTACCAAT
LOC_Os06g01200
Os.49638.1.S1_at--338--411Chr06:142330..142354 (25 bp)
ATCAGGATCCTGTTGGTGGTTCTAC
LOC_Os06g01200
Os.49638.1.S1_at--45--8631Chr06:142343..142367 (25 bp)
TGGTGGTTCTACTGATGCTTCCGGT
LOC_Os06g01200
Os.49638.1.S1_at--452--631Chr06:142357..142381 (25 bp)
ATGCTTCCGGTTCTGGCAACAACAA
LOC_Os06g01200
Os.49638.1.S1_at--695--3251Chr06:142384..142408 (25 bp)
CAACTGGAGGTCATCGTGGCTACGA
LOC_Os06g01200
Os.49638.1.S1_at--487--3011Chr06:145345..145369 (25 bp)
AATGAAGCTAGCCTATTCCGTTCTA
LOC_Os06g01200
Os.49638.1.S1_at--769--91Chr06:145359..145383 (25 bp)
ATTCCGTTCTATTCACCTATCAATG
LOC_Os06g01200
Os.49638.1.S1_at--348--4211Chr06:145409..145433 (25 bp)
CCCCTTCCTTAATTGTGGCATGGAT
LOC_Os06g01200
Os.49638.1.S1_at--32--3511Chr06:145427..145451 (25 bp)
CATGGATTTACTATTGCTGGTTTTG
LOC_Os06g01200
Os.49638.1.S1_at--731--2351Chr06:145609..145633 (25 bp)
AAAGCTTTCCTCTGATTGCTGGCGT
LOC_Os06g01200
Target Sequence 
CACCACCTAGGCTGGCTGAGAGAAGGTTCAGGATATCGCTGCCATGGCCTCTCCGTGCTGCGTTTGGCGGCCAGGCGGAG
AGCAGCAATCCTACCAATCAGGATCCTGTTGGTGGTTCTACTGATGCTTCCGGTTCTGGCAACAACAATGCAACTGGAGG
TCATCGTGGCTACGATGATCTTGACTGAAGAGCATCGGACAAAGAGGGGATGAGGAGGGGCGAGGGACATTGTTTGGAGA
AGAGGTGCGCCGCGGCAATGAAGCTAGCCTATTCCGTTCTATTCACCTATCAATGACGAGAAGAAATGTTGGATTTTTTC
CCCCTTCCTTAATTGTGGCATGGATTTACTATTGCTGGTTTTGGGGTCCTCTGGTGGTGTAGAGAATTTTCTATGGGGGC
CCTTTTCTTGGTGACATGGACATAGACTGGTGGTGAAAAAAAAGAAAGGATGGTGGTGGGGATGTTATACATTTTAAGTA
CTATATGTTACTTGTCATATATACATATCTGGGAGATCTGAAAGCTTTCCTCTGATTGCTGGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49638.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis