Browse Element(s) Details


Os.49650.1.S1_at

Description gb:AK105288.1
DB_XREF= gi:32990497
TID=Os.49650.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49650 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-116-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-116-F01, full insert sequence.
FL= gb:AK105288.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0983011/11Speckle-type POZ protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g09790OsAffx.15141.3.S1_s_at11/118+5652383..5656315hypothetical protein
LOC_Os08g09790OsAffx.15141.2.S1_at11/118+5652383..5656315hypothetical protein
LOC_Os08g09790Os.50851.1.S1_at6/118+5652383..5656315hypothetical protein
LOC_Os08g09790Os.8747.1.S2_x_at1/118+5652383..5656315hypothetical protein
LOC_Os08g09800Os.55100.1.S1_at1/118+5657234..5663062hAT family dimerisation domain containing protein
LOC_Os08g09810NANA8+5666127..5670105hAT family dimerisation domain containing protein
LOC_Os08g09820OsAffx.28855.3.S1_x_at11/118+5671209..5673331hypothetical protein
LOC_Os08g09830Os.49650.1.S1_at11/118+5675116..5676744Speckle-type POZ protein, putative, expressed
LOC_Os08g09840NANA8+5677595..5680461hAT family dimerisation domain containing protein
LOC_Os08g09850OsAffx.16927.1.S1_at11/118+5682425..5683000hypothetical protein
LOC_Os08g09850OsAffx.21729.1.S1_x_at1/118+5682425..5683000hypothetical protein
LOC_Os08g09860OsAffx.5767.1.S1_at9/118+5686782..5689079FMN-dependent dehydrogenase family protein, expressed
LOC_Os08g09860Os.28080.1.A1_at2/118+5686782..5689079FMN-dependent dehydrogenase family protein, expressed
LOC_Os08g09870OsAffx.16928.1.S1_at11/118+5690312..5692276expressed protein
LOC_Os08g09870OsAffx.17566.1.S1_at1/118+5690312..5692276expressed protein
LOC_Os08g09880NANA8+5693915..5696437hAT family dimerisation domain containing protein
LOC_Os08g09890Os.54326.1.S1_at10/118+5700073..5702702expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49650.1.S1_at--837--871Chr08:5676158..5676182 (25 bp)
ATGGCCTCCTTGTTCGGCGACATGA
LOC_Os08g09830
Os.49650.1.S1_at--12--9651Chr08:5676210..5676234 (25 bp)
TCAGGGACATCGAGCCACAGGTGTT
LOC_Os08g09830
Os.49650.1.S1_at--762--8791Chr08:5676231..5676255 (25 bp)
TGTTCGGAGCAATGCTCGGCTTCAT
LOC_Os08g09830
Os.49650.1.S1_at--417--7791Chr08:5676268..5676292 (25 bp)
GGTGCCGGAGCTCGATCAACAAGAC
LOC_Os08g09830
Os.49650.1.S1_at--1116--4231Chr08:5676489..5676513 (25 bp)
CCGTCATGGCGACCGAGGGTTACAA
LOC_Os08g09830
Os.49650.1.S1_at--807--7671Chr08:5676505..5676529 (25 bp)
GGGTTACAAGCATCTCATGGCGAGC
LOC_Os08g09830
Os.49650.1.S1_at--1030--5891Chr08:5676526..5676550 (25 bp)
GAGCTCGCCGCTGGTGATGAATGAT
LOC_Os08g09830
Os.49650.1.S1_at--242--8871Chr08:5676540..5676564 (25 bp)
TGATGAATGATCTCCTCAGGGCTGT
LOC_Os08g09830
Os.49650.1.S1_at--295--6151Chr08:5676594..5676618 (25 bp)
GAGGTGATTAGTCCCAATCTCAAAC
LOC_Os08g09830
Os.49650.1.S1_at--698--4971Chr08:5676668..5676692 (25 bp)
GCATCTGATGTTGCGTTATCTCGTA
LOC_Os08g09830
Os.49650.1.S1_at--118--9831Chr08:5676714..5676738 (25 bp)
TAAACAGTTTCAGCCCACTATGAAT
LOC_Os08g09830
Target Sequence 
ATGGCCTCCTTGTTCGGCGACATGAAGGAGAAGAGCTCCCGGAGCGTCGAGATCAGGGACATCGAGCCACAGGTGTTCGG
AGCAATGCTCGGCTTCATCTACACCGACTCGGTGCCGGAGCTCGATCAACAAGACGGCGTCGTCGTCGCGCAGCACCTGC
TGGCGGCGGCGGACATGTGCGGGCTCGACGGGCTGAAGATCATGTGCGAGGAGAAGCTCATCGCTGGCGCCACCGTGGAG
ACGGCGGCGACGACGCTGGCGCTGGCGGAGCAGCATGGGTGCCCGCGGCTCAAGGCGAGGTGCGTCGAGGTCGTCGCCGC
GAACCTCGACGCCGTCATGGCGACCGAGGGTTACAAGCATCTCATGGCGAGCTCGCCGCTGGTGATGAATGATCTCCTCA
GGGCTGTGCGTGGAAGGAAGAGCTGAATTAATCACCGAGGTGATTAGTCCCAATCTCAAACATTTGGTATTACTAATAGC
AATGCTATGTATAGGTAGGAGTATTTGCTTGCATCTGATGTTGCGTTATCTCGTATGTAATGAACAGCTAAGCTCATAAA
CAGTTTCAGCCCACTATGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49650.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis