Browse Element(s) Details


Os.49742.2.S1_at

Description gb:AK106281.1
DB_XREF= gi:32991490
TID=Os.49742.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49742 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-102-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-A03, full insert sequence.
FL= gb:AK106281.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1921011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19160Os.54101.1.S1_x_at11/118+11454015..11456370Endomembrane protein 70 containing protein, expressed
LOC_Os08g19160Os.54241.1.S1_at11/118+11454015..11456370Endomembrane protein 70 containing protein, expressed
LOC_Os08g19170Os.7479.1.A1_at11/118+11456662..11462366G-patch domain containing protein, expressed
LOC_Os08g19170OsAffx.29271.1.S1_at11/118+11456662..11462366G-patch domain containing protein, expressed
LOC_Os08g19170Os.25401.1.S1_s_at10/118+11456662..11462366G-patch domain containing protein, expressed
LOC_Os08g19170Os.25401.2.S1_at9/118+11456662..11462366G-patch domain containing protein, expressed
LOC_Os08g19180OsAffx.31278.1.S1_at7/118+11463796..11466538Transposable element protein, putative, MuDR
LOC_Os08g19180OsAffx.31379.1.S1_at1/118+11463796..11466538Transposable element protein, putative, MuDR
LOC_Os08g19190OsAffx.29272.3.S1_x_at11/118+11467146..11468858hypothetical protein
LOC_Os08g19190OsAffx.29272.2.S1_x_at7/118+11467146..11468858hypothetical protein
LOC_Os08g19200OsAffx.5875.1.S1_at11/118+11470766..11471227hypothetical protein
LOC_Os08g19210Os.49742.2.S1_at11/118+11480945..11485029expressed protein
LOC_Os08g19210Os.49742.1.S1_at11/118+11480945..11485029expressed protein
LOC_Os08g19220Os.45976.1.S1_x_at1/118+11487582..11494927transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g19230OsAffx.29273.1.S1_at11/118+11498186..11498776hypothetical protein
LOC_Os08g19240OsAffx.5876.1.S1_at11/118+11504244..11504579hypothetical protein
LOC_Os08g19240OsAffx.25952.1.S1_s_at1/118+11504244..11504579hypothetical protein
LOC_Os08g19250OsAffx.19542.3.S1_x_at7/118+11505987..11512467retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g19250OsAffx.12926.1.S1_at2/118+11505987..11512467retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g19250Os.15946.1.S1_at1/118+11505987..11512467retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g19250OsAffx.21754.1.S1_x_at1/118+11505987..11512467retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49742.2.S1_at--383--6831Chr08:11481964..11481988 (25 bp)
GTTTCCGTTTGGATTCAGAACTCTT
LOC_Os08g19210
Os.49742.2.S1_at--420--10771Chr08:11481987..11482011 (25 bp)
TTGAGCTCTTTCTTGTGCCCTGAAA
LOC_Os08g19210
Os.49742.2.S1_at--486--10671Chr08:11482071..11482095 (25 bp)
TTCCTCGGGCGATTTGCTTGTGATC
LOC_Os08g19210
Os.49742.2.S1_at--837--4931Chr08:11482105..11482129 (25 bp)
GCTTGTGTGATGATTCTCGCAACGA
LOC_Os08g19210
Os.49742.2.S1_at--320--5591Chr08:11482141..11482165 (25 bp)
GAAATCAGACGACAAGTTCCCTTTT
LOC_Os08g19210
Os.49742.2.S1_at--416--6271Chr08:11482206..11482230 (25 bp)
GATGTGCCTGCAACGATTTTTCTGA
LOC_Os08g19210
Os.49742.2.S1_at--1133--5771Chr08:11482229..11482253 (25 bp)
GACGAAATCCGTTTGCTTTTCACCT
LOC_Os08g19210
Os.49742.2.S1_at--1146--3651Chr08:11482244..11482268 (25 bp)
CTTTTCACCTCTTTTGTTCACTTAT
LOC_Os08g19210
Os.49742.2.S1_at--976--3671Chr08:11482337..11482361 (25 bp)
CTTTGGACCCGTAAATTCAGCTTAT
LOC_Os08g19210
Os.49742.2.S1_at--462--1231Chr08:11482368..11482392 (25 bp)
AGATGAAGCATTTTTTAGGTCCGTT
LOC_Os08g19210
Os.49742.2.S1_at--478--8591Chr08:11482437..11482461 (25 bp)
TGGTAGTTTTCCTTGTCTGTTACGA
LOC_Os08g19210
Target Sequence 
GTTTCCGTTTGGATTCAGAACTCTTGAGCTCTTTCTTGTGCCCTGAAATCTTCTTTCTTCCAGTCCCTTCCTCGTGCGAT
TCGCTTTTATTTTTCTCTTCAAGTTCCTTCCTCGGGCGATTTGCTTGTGATCTGTGTTCTTGCTTGTGTGATGATTCTCG
CAACGATTTTTTGTTAGGAAATCAGACGACAAGTTCCCTTTTTTGACTTAAAATTCCACCTTGATTTGATTTGTGTATGG
GAGATGTGCCTGCAACGATTTTTCTGACGAAATCCGTTTGCTTTTCACCTCTTTTGTTCACTTATTATAGAAAAAAATAG
TCGTACTACCATAGTGTTTATCTGTTTAATCTCAACAGAAATTTAAACATTTACTTTGGACCCGTAAATTCAGCTTATTT
GCCAAGATGAAGCATTTTTTAGGTCCGTTCAAAAAAGCTCTTCCTTTGTTTTTTCACTATATCATTTTAGTAGTGGTAGT
TTTCCTTGTCTGTTACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49742.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis