Browse Element(s) Details


Os.49779.1.S1_at

Description gb:AK111499.1
DB_XREF= gi:37988162
TID=Os.49779.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.49779 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-304-A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000K22, full insert sequence.
FL= gb:AK104527.1 gb:AK111499.1 gb:AK104362.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6260011/11Ras-related protein Rab11C, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62530OsAffx.13585.1.S1_at11/113+35346485..35347515hypothetical protein
LOC_Os03g62539OsAffx.13586.2.S1_at11/113+35349356..35351555hypothetical protein
LOC_Os03g62550Os.54917.1.S1_at11/113+35353014..35354937expressed protein
LOC_Os03g62560NANA3+35358735..35359684hypothetical protein
LOC_Os03g62570OsAffx.25797.1.S1_at11/113+35361002..35361877hypothetical protein
LOC_Os03g62580Os.27446.2.S1_at11/113+35363412..35367021Vacuolar sorting protein 9 domain containing protein, expressed
LOC_Os03g62580Os.27446.1.S1_a_at11/113+35363412..35367021Vacuolar sorting protein 9 domain containing protein, expressed
LOC_Os03g62580Os.27446.3.S1_x_at10/113+35363412..35367021Vacuolar sorting protein 9 domain containing protein, expressed
LOC_Os03g62590Os.16157.1.S1_at11/113+35367580..35369420steroleosin-B, putative, expressed
LOC_Os03g62600Os.49779.1.S1_at11/113+35371671..35373522Ras-related protein Rab11C, putative, expressed
LOC_Os03g62610Os.49304.1.A1_at10/113+35375742..35379887expressed protein
LOC_Os03g62620Os.10611.1.S1_at11/113+35379908..35382548salt tolerance protein, putative, expressed
LOC_Os03g62630Os.26040.1.S1_at11/113+35383358..35385296ribosomal protein S6 family protein, putative, expressed
LOC_Os03g62640Os.11748.2.S2_a_at11/113+35385374..35391403RNA-binding protein Luc7-like 2, putative, expressed
LOC_Os03g62640Os.11748.2.S2_at11/113+35385374..35391403RNA-binding protein Luc7-like 2, putative, expressed
LOC_Os03g62640Os.11748.2.S1_a_at10/113+35385374..35391403RNA-binding protein Luc7-like 2, putative, expressed
LOC_Os03g62650Os.25061.1.S1_at11/113+35392356..35399319Ion channel DMI1-like, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49779.1.S1_at--355--2811Chr03:35372214..35372238 (25 bp)
AAGATCGACCTCAAGCATCTCCGGT
LOC_Os03g62600
Os.49779.1.S1_at--381--471Chr03:35372198..35372222 (25 bp)
ATCTCCGGTCAGTGTCCTTGGAGGA
LOC_Os03g62600
Os.49779.1.S1_at--307--1311Chr03:35372156..35372180 (25 bp)
AGAGGGAGGGCCTATCCTTCGTCGA
LOC_Os03g62600
Os.49779.1.S1_at--513--2351Chr03:35372100..35372124 (25 bp)
AAAGCTTTTCAGACAGTGCTCACTG
LOC_Os03g62600
Os.49779.1.S1_at--275--1131Chr03:35372086..35372110 (25 bp)
AGTGCTCACTGAGATCTACCGGATC
LOC_Os03g62600
Os.49779.1.S1_at--809--1331Chr03:35372005..35372029 (25 bp)
AGAGGGCCAATCTATCCAAGTCTCC
LOC_Os03g62600
Os.49779.1.S1_at--957--4591Chr03:35371980..35372004 (25 bp)
GCGACAGATTCCAGCAGTTTTACAT
LOC_Os03g62600
Os.49779.1.S1_at--1150--1291Chr03:35371953..35371977 (25 bp)
AGATGTTGCTCTTTCTAGTGGCCAT
LOC_Os03g62600
Os.49779.1.S1_at--367--1091Chr03:35371937..35371961 (25 bp)
AGTGGCCATCGATATCGTTTCCATT
LOC_Os03g62600
Os.49779.1.S1_at--580--7031Chr03:35371798..35371822 (25 bp)
GTACAGCCGCTTCGACAATTTGGAT
LOC_Os03g62600
Os.49779.1.S1_at--344--5031Chr03:35371738..35371762 (25 bp)
GCAGTTGCTGTTATACTATTGCCAA
LOC_Os03g62600
Target Sequence 
AAGATCGACCTCAAGCATCTCCGGTCAGTGTCCTTGGAGGACGCAACAAGCTTTGCAGAGAGGGAGGGCCTATCCTTCGT
CGAGACCTCGGCGCTCGACGCGACGAATGTGGATAAAGCTTTTCAGACAGTGCTCACTGAGATCTACCGGATCATCAGCA
AGAAGGCATTGGCTGCAGATGAGGCTGGAGCTGGTGCTGGTGCTGTCAGAGAGGGCCAATCTATCCAAGTCTCCGCGACA
GATTCCAGCAGTTTTACATCAAGATGTTGCTCTTTCTAGTGGCCATCGATATCGTTTCCATTGGATTGCTTGAGGTGATC
CTATTTGTAATTGTCAAAATGTGGTGTCATGCAACAAGAATAAAGGATTACATTCAGGAGATGAAGATTTTTCATTCTGT
ACATAAGAGTAACATAGTACAGCCGCTTCGACAATTTGGATCTGAATATCATAAACTCGTGCTATGCATGGGTGATGCAG
TTGCTGTTATACTATTGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49779.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis