Browse Element(s) Details


Os.49793.1.S1_at

Description gb:AK111608.1
DB_XREF= gi:37988271
TID=Os.49793.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49793 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013102J06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013102J06, full insert sequence.
FL= gb:AK111608.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3446011/11Auxin-binding protein 4 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g34390OsAffx.32016.1.S1_at11/1112+20814521..20816387hypothetical protein
LOC_Os12g34400OsAffx.19965.1.S1_at11/1112+20816565..20817807hypothetical protein
LOC_Os12g34410OsAffx.32017.1.S1_x_at11/1112+20819337..20821283hypothetical protein
LOC_Os12g34410OsAffx.32017.1.S1_at11/1112+20819337..20821283hypothetical protein
LOC_Os12g34419NANA12+20822908..20823369hypothetical protein
LOC_Os12g34430NANA12+20824734..20825060expressed protein
LOC_Os12g34440Os.34869.1.A1_at11/1112+20827619..20829539expressed protein
LOC_Os12g34450NANA12+20834350..20835503Auxin-binding protein 4 precursor, putative
LOC_Os12g34460Os.49793.1.S1_at11/1112+20835982..20837973Auxin-binding protein 4 precursor, putative, expressed
LOC_Os12g34470OsAffx.32018.1.S1_at11/1112+20840598..20841257hypothetical protein
LOC_Os12g34480OsAffx.32020.1.S1_s_at11/1112+20843401..20843868hypothetical protein
LOC_Os12g34480OsAffx.32020.2.S1_at11/1112+20843401..20843868hypothetical protein
LOC_Os12g34490OsAffx.32020.1.S1_s_at11/1112+20846109..20846582hypothetical protein
LOC_Os12g34500Os.48388.1.S1_at8/1112+20851271..20852959expressed protein
LOC_Os12g34510Os.4755.1.S1_at11/1112+20854827..20855670Histone H2A, putative, expressed
LOC_Os12g34524Os.51257.1.S1_at11/1112+20856662..20866142Peroxidase family protein, expressed
LOC_Os12g34524Os.20284.1.S1_x_at11/1112+20856662..20866142Peroxidase family protein, expressed
LOC_Os12g34524Os.20284.1.S1_at11/1112+20856662..20866142Peroxidase family protein, expressed
LOC_Os12g34524OsAffx.23331.4.S1_at1/1112+20856662..20866142Peroxidase family protein, expressed
LOC_Os12g34524Os.6093.2.S2_at1/1112+20856662..20866142Peroxidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000910biological_processcytokinesis
GO:0009826biological_processunidimensional cell growth
GO:0010011molecular_functionauxin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49793.1.S1_at--1031--6351Chr12:20836790..20836814 (25 bp)
GATCCACAGGCACTCGTGCGAGGAA
LOC_Os12g34460
Os.49793.1.S1_at--127--4611Chr12:20836807..20836831 (25 bp)
GCGAGGAAGTTTTTGTCGTCTTGAA
LOC_Os12g34460
Os.49793.1.S1_at--769--1071Chr12:20836877..20836901 (25 bp)
AGGGCAGCCTCAGGAGATTCCCGTC
LOC_Os12g34460
Os.49793.1.S1_at--649--6051Chr12:20836890..20836914 (25 bp)
GAGATTCCCGTCTTTCAGAATAGCA
LOC_Os12g34460
Os.49793.1.S1_at--905--10511Chr12:20836903..20836927 (25 bp)
TTCAGAATAGCACATTCTCTGTTCC
LOC_Os12g34460
Os.49793.1.S1_at--811--4151Chr12:20837178..20837619 (25 bp)
CGCCCACCTGTCAAGATATTTACAT
LOC_Os12g34460
Os.49793.1.S1_at--695--8691Chr12:20837633..20837657 (25 bp)
TGTGCCTCATACAGCAGCAAAACTG
LOC_Os12g34460
Os.49793.1.S1_at--667--311Chr12:20837775..20837799 (25 bp)
ATACTTGCTGTAACTCTTTTCCCTT
LOC_Os12g34460
Os.49793.1.S1_at--906--9751Chr12:20837805..20837829 (25 bp)
TAATGTGCAGTTCTAAAATGTGTTC
LOC_Os12g34460
Os.49793.1.S1_at--840--1551Chr12:20837861..20837885 (25 bp)
AGCTTTTGCAGTAAGGACCACTGTA
LOC_Os12g34460
Os.49793.1.S1_at--982--2271Chr12:20837946..20837970 (25 bp)
AAATGCCTACACAGCTGGTTTCTTG
LOC_Os12g34460
Target Sequence 
GATCCACAGGCACTCGTGCGAGGAAGTTTTTGTCGTCTTGAAAGGGAAAGGGACACTCTTGCTGGGGTCAAGCTCAATGA
AGTATCCAGGGCAGCCTCAGGAGATTCCCGTCTTTCAGAATAGCACATTCTCTGTTCCTGTAAATGATCCGCACCAGGTT
TGGAATTCTGATGAACATGAGGATTTGCAGGTGCTTGTGATCATTTCGCGCCCACCTGTCAAGATATTTACATATGACGA
TTGGAGTGTGCCTCATACAGCAGCAAAACTGAAGTTCCCCTACTTCTGGGATGAGGACTGCTTACCAGCACCGAAGGATG
AACTCTAGTTTCTAAACCGGCTATTGCAGTGTATCATCTTCATTCAAGATACTGCTGGATTGCGGTCGATACTTGCTGTA
ACTCTTTTCCCTTCTCTCTAATGTGCAGTTCTAAAATGTGTTCTCTTGCTTAATGTCAGGACTTATGTACTTAGAGCTTT
TGCAGTAAGGACCACTGTAAGTGTAAACTAGTTACATAATAACGCTTCACTAATCCAGACATTATCTGTGTATATAAATA
AATGCCTACACAGCTGGTTTCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49793.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis