Browse Element(s) Details


Os.49868.1.S1_at

Description gb:AK112108.1
DB_XREF= gi:37988771
TID=Os.49868.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49868 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-111-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-111-C04, full insert sequence.
FL= gb:AK112108.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1158011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11540OsAffx.30936.1.S1_at11/1111+6413041..6413457hypothetical protein
LOC_Os11g11540OsAffx.15878.1.S1_x_at1/1111+6413041..6413457hypothetical protein
LOC_Os11g11550Os.27620.2.S1_x_at11/1111+6415329..6419818NB-ARC domain containing protein, expressed
LOC_Os11g11550Os.27620.3.S1_at10/1111+6415329..6419818NB-ARC domain containing protein, expressed
LOC_Os11g11560NANA11+6426097..6426351hypothetical protein
LOC_Os11g11570NANA11+6430524..6430778hypothetical protein
LOC_Os11g11580Os.49868.1.S1_at11/1111+6435787..6444994NB-ARC domain containing protein, expressed
LOC_Os11g11580OsAffx.30932.1.S1_at11/1111+6435787..6444994NB-ARC domain containing protein, expressed
LOC_Os11g11580Os.50218.1.S1_at1/1111+6435787..6444994NB-ARC domain containing protein, expressed
LOC_Os11g11590NANA11+6446126..6446623hypothetical protein
LOC_Os11g11600OsAffx.7080.1.S1_x_at11/1111+6447896..6449204hypothetical protein
LOC_Os11g11610NANA11+6450574..6451151hypothetical protein
LOC_Os11g11620OsAffx.30930.1.S1_s_at11/1111+6457691..6460748ZmEBE-1 protein, putative
LOC_Os11g11620OsAffx.30930.2.S1_at9/1111+6457691..6460748ZmEBE-1 protein, putative
LOC_Os11g11620OsAffx.30930.1.S1_at2/1111+6457691..6460748ZmEBE-1 protein, putative
LOC_Os11g11620Os.53177.1.S1_s_at1/1111+6457691..6460748ZmEBE-1 protein, putative
LOC_Os11g11630NANA11+6467013..6467767hypothetical protein
LOC_Os11g11640OsAffx.7082.1.S1_at11/1111+6468800..6469165hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49868.1.S1_at--81--6991Chr11:6444397..6444421 (25 bp)
GTACGCCACGGAGCCGGCAAGAGAT
LOC_Os11g11580
Os.49868.1.S1_at--1139--1291Chr11:6444418..6444442 (25 bp)
AGATGTAAGTTTCTGGGCTGCACCA
LOC_Os11g11580
Os.49868.1.S1_at--600--6531Chr11:6444463..6444487 (25 bp)
GATTTCTGCAAGACGCACGGTGGAT
LOC_Os11g11580
Os.49868.1.S1_at--753--6291Chr11:6444499..6444523 (25 bp)
GATGATACTCTGTGCTCATGGCGAG
LOC_Os11g11580
Os.49868.1.S1_at--1062--2891Chr11:6444579..6444603 (25 bp)
AAGGTCTGGTCTATGTGCAGCTCAC
LOC_Os11g11580
Os.49868.1.S1_at--620--9071Chr11:6444627..6444651 (25 bp)
TGCTTCCTGCGATGGCACAATAGCC
LOC_Os11g11580
Os.49868.1.S1_at--1069--1611Chr11:6444665..6444689 (25 bp)
AGCTGGTCCAGGCAGATGAACTCAT
LOC_Os11g11580
Os.49868.1.S1_at--694--771Chr11:6444698..6444722 (25 bp)
ATGTGATAGAACACCCTGCCGTGGA
LOC_Os11g11580
Os.49868.1.S1_at--451--5271Chr11:6444804..6444828 (25 bp)
GAATGCCGAGGCGATTATTACACAA
LOC_Os11g11580
Os.49868.1.S1_at--806--8151Chr11:6444860..6444884 (25 bp)
GGAAAGCTAGTCCTGTGTTGATTTA
LOC_Os11g11580
Os.49868.1.S1_at--917--6631Chr11:6444888..6444912 (25 bp)
GTTGTAAGCGCCAATGTAGTTCATT
LOC_Os11g11580
Target Sequence 
GTACGCCACGGAGCCGGCAAGAGATGTAAGTTTCTGGGCTGCACCAAGAGCACAAGGCGAAGCACCGATTTCTGCAAGAC
GCACGGTGGATCAGGAGGTGCAGATGATACTCTGTGCTCATGGCGAGGAGGGGAATCAAGCGTTGGTGGTGGCGAGGACA
AGTGTGATAGAATTGCTCGGGGAAGGTCTGGTCTATGTGCAGCTCACAGCGCTCTTGTCCTGGACGACCGTGCTTCCTGC
GATGGCACAATAGCCCCAGCAGCCGCCCAGCTGGTCCAGGCAGATGAACTCATCAAACCCGATGTGATAGAACACCCTGC
CGTGGAGGCAGGTCGCGATGACAAAGCTGATGGTGGTGTTGGAGGATCAGGATCAGCAGCGGCTGAGGCTGACTAAAGAC
TAGATTTGAATGCCGAGGCGATTATTACACAACATTTCTTTGTTTGAGGGGAAAAAAAAAACAGGAAAGCTAGTCCTGTG
TTGATTTATTTGTTGTAAGCGCCAATGTAGTTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49868.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis