Browse Element(s) Details


Os.49902.1.S1_at

Description gb:AK119314.1
DB_XREF= gi:37988937
TID=Os.49902.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49902 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-130-G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-130-G11, full insert sequence.
FL= gb:AK119314.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4105011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41010Os.28384.1.S1_at11/116+24490982..24493135AN1-like Zinc finger family protein, expressed
LOC_Os06g41020OsAffx.28032.2.S1_at10/116+24494063..24499901expressed protein
LOC_Os06g41030OsAffx.28033.1.S1_x_at11/116+24501393..24506550secreted protein, putative, expressed
LOC_Os06g41030OsAffx.28033.1.S1_s_at11/116+24501393..24506550secreted protein, putative, expressed
LOC_Os06g41030Os.5721.1.A1_at9/116+24501393..24506550secreted protein, putative, expressed
LOC_Os06g41040OsAffx.5072.1.S1_at11/116+24509258..24511552pentatricopeptide, putative, expressed
LOC_Os06g41050Os.49902.1.S1_at11/116+24515545..24518259expressed protein
LOC_Os06g41060Os.4952.1.S1_at11/116+24521244..24526835bHLH transcription factor, putative, expressed
LOC_Os06g41060OsAffx.15870.1.S1_at10/116+24521244..24526835bHLH transcription factor, putative, expressed
LOC_Os06g41070OsAffx.12985.3.S1_x_at11/116+24531077..24532738Cytochrome P450 family protein, expressed
LOC_Os06g41080OsAffx.19542.3.S1_x_at6/116+24541392..24551972retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g41080Os.49954.1.S1_at1/116+24541392..24551972retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g41080OsAffx.9949.1.S1_at1/116+24541392..24551972retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006974biological_processresponse to DNA damage stimulus
GO:0010212biological_processresponse to ionizing radiation
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49902.1.S1_at--786--6271Chr06:24517659..24517683 (25 bp)
GATGTCAATATTGCCACCCAGGGCC
LOC_Os06g41050
Os.49902.1.S1_at--450--4371Chr06:24517694..24517718 (25 bp)
GCCAGTTCCCAAGCAGCAAAGTACA
LOC_Os06g41050
Os.49902.1.S1_at--486--1171Chr06:24517713..24517737 (25 bp)
AGTACAATTTCAATCCAACCACCAA
LOC_Os06g41050
Os.49902.1.S1_at--900--7371Chr06:24517861..24517885 (25 bp)
GTGACGGTGTGGACTCTACAAGCAT
LOC_Os06g41050
Os.49902.1.S1_at--548--5931Chr06:24517893..24517917 (25 bp)
GAGCATCATGATGGCGTATCCAGAC
LOC_Os06g41050
Os.49902.1.S1_at--158--6911Chr06:24517908..24517932 (25 bp)
GTATCCAGACATCGCTACAGGTACG
LOC_Os06g41050
Os.49902.1.S1_at--1042--4511Chr06:24517937..24517961 (25 bp)
GCCGCTGACACCTGAAGGGTTTTGG
LOC_Os06g41050
Os.49902.1.S1_at--842--1191Chr06:24517996..24518020 (25 bp)
AGTATGATGCGCTCTTCATTGATTA
LOC_Os06g41050
Os.49902.1.S1_at--67--8831Chr06:24518015..24518039 (25 bp)
TGATTAGTGCAGTGTCGTGCCCTAA
LOC_Os06g41050
Os.49902.1.S1_at--505--7171Chr06:24518028..24518052 (25 bp)
GTCGTGCCCTAACATAGGTTCTCAG
LOC_Os06g41050
Os.49902.1.S1_at--870--7011Chr06:24518168..24518192 (25 bp)
GTACTTACTGTCACATCGATTCTAT
LOC_Os06g41050
Target Sequence 
GATGTCAATATTGCCACCCAGGGCCAGAAAAACATGCCAGTTCCCAAGCAGCAAAGTACAATTTCAATCCAACCACCAAA
TAAAGGTTTCAAATACACAGAACCTGTAAGAAAAAAGGCTGACCGGGAGAATCTGAAAGGCGTTGAGTGCAAGCAGTGCA
AGAAATTCTATGATGCTGTTCTTCCAGATGGCCGCACAAATGGTGACGGTGTGGACTCTACAAGCATGAGGTGTGAGCAT
CATGATGGCGTATCCAGACATCGCTACAGGTACGCGCCGCCGCTGACACCTGAAGGGTTTTGGAACATTGGGTTTGAATC
AGAAATGTAGCACATGAAGTATGATGCGCTCTTCATTGATTAGTGCAGTGTCGTGCCCTAACATAGGTTCTCAGTCACCC
CCCAGATACTGTTAATAATGTCAGTAGTAAATCTCATGCTGGGGAAATGATCATTTCTTTTTTTAAGATTATATGTTTGG
ATAGAATGCCAATTTGTTGAAGATAGAATGTACTTACTGTCACATCGATTCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49902.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis