Browse Element(s) Details


Os.49917.1.S1_at

Description gb:AK119351.1
DB_XREF= gi:37988974
TID=Os.49917.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49917 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-131-F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-131-F03, full insert sequence.
FL= gb:AK119351.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2821011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g28170OsAffx.26198.1.S1_at10/114+16452091..16455192expressed protein
LOC_Os04g28180Os.11541.1.S1_at11/114+16458323..1646099440S ribosomal protein S8, putative, expressed
LOC_Os04g28190OsAffx.3928.1.S1_at11/114+16464032..16465327hypothetical protein
LOC_Os04g28200Os.53129.1.S1_at11/114+16474406..16477095Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28200Os.53129.1.S1_x_at11/114+16474406..16477095Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28200OsAffx.26202.1.S1_x_at6/114+16474406..16477095Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28210Os.49917.1.S1_at11/114+16479878..16483077Leucine Rich Repeat family protein, expressed
LOC_Os04g28220OsAffx.14013.2.S1_at10/114+16490338..16493211hypothetical protein
LOC_Os04g28220OsAffx.30648.1.S1_at3/114+16490338..16493211hypothetical protein
LOC_Os04g28220OsAffx.31267.1.S1_at2/114+16490338..16493211hypothetical protein
LOC_Os04g28220OsAffx.29480.2.S1_at1/114+16490338..16493211hypothetical protein
LOC_Os04g28220OsAffx.19695.1.S1_at1/114+16490338..16493211hypothetical protein
LOC_Os04g28220Os.57082.1.S1_at1/114+16490338..16493211hypothetical protein
LOC_Os04g28234Os.50454.1.S2_at11/114+16497738..16506043Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28234Os.50454.2.S1_at11/114+16497738..16506043Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28234Os.50454.1.S1_at11/114+16497738..16506043Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28234Os.50454.1.S1_x_at11/114+16497738..16506043Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28250Os.9817.1.S1_at11/114+16506608..16507443cystatin, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49917.1.S1_at--189--3611Chr04:16480426..16480450 (25 bp)
CATTGTGTTGTTCCTTTTTGCCGGA
LOC_Os04g28210
Os.49917.1.S1_at--595--7931Chr04:16480386..16480410 (25 bp)
GGATTCGCAATTGCAATTCTCTTAA
LOC_Os04g28210
Os.49917.1.S1_at--1033--7251Chr04:16480339..16480363 (25 bp)
GTCCTTAGCTTTACGACTGTCGCAA
LOC_Os04g28210
Os.49917.1.S1_at--662--8711Chr04:16480322..16480346 (25 bp)
TGTCGCAATGAGCTACCAGGGCAAT
LOC_Os04g28210
Os.49917.1.S1_at--560--1531Chr04:16480277..16480301 (25 bp)
AGCTACTTCACCTAACCAATTACAG
LOC_Os04g28210
Os.49917.1.S1_at--1093--3451Chr04:16480233..16480257 (25 bp)
CAGGAAGTGTCCCTAGCCTAGCTAG
LOC_Os04g28210
Os.49917.1.S1_at--166--10011Chr04:16480215..16480239 (25 bp)
TAGCTAGCTCAGATAGGTGCCCTCG
LOC_Os04g28210
Os.49917.1.S1_at--242--1431Chr04:16480120..16480144 (25 bp)
AGAAACACCGAGCTTCTGCTAGGTT
LOC_Os04g28210
Os.49917.1.S1_at--1066--1011Chr04:16480039..16480063 (25 bp)
AGGTTTGTCCACATTGTTATCTCAG
LOC_Os04g28210
Os.49917.1.S1_at--904--6051Chr04:16480015..16480039 (25 bp)
GAGTTCACTCTACATTACAGCTTTT
LOC_Os04g28210
Os.49917.1.S1_at--1118--251Chr04:16479950..16479974 (25 bp)
ATATGCTCGACTTTGTATCTCTCTA
LOC_Os04g28210
Target Sequence 
CATTGTGTTGTTCCTTTTTGCCGGACTCGGATTTGGTGTTGGATTCGCAATTGCAATTCTCTTAACATGGGGAACCTCAA
GGAGCTTGTCCTTAGCTTTACGACTGTCGCAATGAGCTACCAGGGCAATGCTCTGTCTTCCACTCGTCCAGCTACTTCAC
CTAACCAATTACAGTATCTTAAGAGGGGACACGCAGGAAGTGTCCCTAGCCTAGCTAGCTCAGATAGGTGCCCTCGTGCA
TCCAAACAACTTAATTTTGAGTCCTCTTCAACTCAAATTTGTGTGCCTATTTCTTCTTCTTAATAAAGAAACACCGAGCT
TCTGCTAGGTTGAATCTCTTCTTTTTCAAGAGGAGCTAGGCTCACCTTCCCATCACTCAAGGATCTAAGGTTTGTCCACA
TTGTTATCTCAGAGTTCACTCTACATTACAGCTTTTCTTTATCTAGGGGTGTGCATTCATTTCAAATAGGGGCTATATAT
GCTCGACTTTGTATCTCTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49917.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis