Browse Element(s) Details


Os.49940.1.S1_at

Description gb:AK119406.1
DB_XREF= gi:37989029
TID=Os.49940.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49940 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-132-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-132-F01, full insert sequence.
FL= gb:AK119406.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1065011/11hydroxyproline-rich glycoprotein family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10610OsAffx.25962.1.S1_at11/114+5738619..5742774SWIM zinc finger family protein
LOC_Os04g10620OsAffx.22947.2.S1_x_at9/114+5745226..5749800retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g10620OsAffx.22947.1.S1_x_at8/114+5745226..5749800retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g10620OsAffx.22947.3.S1_x_at7/114+5745226..5749800retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g10620OsAffx.22947.5.S1_x_at2/114+5745226..5749800retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g10630OsAffx.25963.1.S1_at10/114+5755640..5759107hypothetical protein
LOC_Os04g10640OsAffx.13757.1.S1_at11/114+5761642..5762419amidase family protein, putative
LOC_Os04g10650Os.49940.1.S1_at11/114+5765594..5768521hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os04g10650Os.31700.4.S1_x_at3/114+5765594..5768521hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os04g10660OsAffx.13758.1.S1_at9/114+5770723..5771269hypothetical protein
LOC_Os04g10680Os.13480.1.S1_at10/114+5782079..5791064Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g10690Os.57546.1.S1_x_at1/114+5791368..5793089phosphate:H+ symporter family protein, expressed
LOC_Os04g10690Os.46784.1.S1_x_at1/114+5791368..5793089phosphate:H+ symporter family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006260biological_processDNA replication
GO:0009658biological_processchloroplast organization and biogenesis
GO:0005634cellular_componentnucleus
GO:0009507cellular_componentchloroplast
GO:0004693molecular_functioncyclin-dependent protein kinase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49940.1.S1_at--764--10011Chr04:5766381..5766405 (25 bp)
TAGCATCACTGCCAAGCATCTTTGA
LOC_Os04g10650
Os.49940.1.S1_at--592--4971Chr04:5766366..5766390 (25 bp)
GCATCTTTGACATTATCTTCCTTAT
LOC_Os04g10650
Os.49940.1.S1_at--1058--431Chr04:5766343..5766367 (25 bp)
ATCTATCAATCAAGGCAGCGCACTG
LOC_Os04g10650
Os.49940.1.S1_at--1053--7951Chr04:5766122..5766146 (25 bp)
GGATCTCTGAGAAAACCGCACGAAC
LOC_Os04g10650
Os.49940.1.S1_at--489--2571Chr04:5766104..5766124 (21 bp)
AACTGGTGATGTTCTCTGTTGTGTG
LOC_Os04g10650
Os.49940.1.S1_at--502--10051Chr04:5765878..5765902 (25 bp)
TAGTACTGCAGGGATGCCTATCGAT
LOC_Os04g10650
Os.49940.1.S1_at--340--6491Chr04:5765856..5765880 (25 bp)
GATAGCAACTTTACAACCACAGAGG
LOC_Os04g10650
Os.49940.1.S1_at--180--9671Chr04:5765769..5765793 (25 bp)
TCACATCCCGTTCAAGCTCAAATGA
LOC_Os04g10650
Os.49940.1.S1_at--947--5671Chr04:5765742..5765766 (25 bp)
GACTTGTATAGATAACCCAGCCTTG
LOC_Os04g10650
Os.49940.1.S1_at--112--4451Chr04:5765723..5765747 (25 bp)
GCCTTGCTAACTGATTGCTGTTGTT
LOC_Os04g10650
Os.49940.1.S1_at--238--6691Chr04:5765693..5765717 (25 bp)
GTTCCATCGTGTGTAAACTCTATTT
LOC_Os04g10650
Target Sequence 
TAGCATCACTGCCAAGCATCTTTGACATTATCTTCCTTATCTATCAATCAAGGCAGCGCACTGTGATGACAAAGCAGGAG
CTCATCCACAAGATAATTGCAAGCAATCCAAAAATTGTGGACAGAGGTGAAGTTGAAGATCAGTTAAAATTGTTGGAAGA
GATAATTCCAGACTGGATCTCTGAGAAAACCGCACGAACTGGTGATGTTCTCTGTTGTGTGGATACAGCAATGAGCCAAG
CAGAGATTCGACAGAGGCTGTATGCTGCTGAATAGGGAGGAACTGCAGTATGGATACATTTTGGTTAGTACTGCAGGGAT
GCCTATCGATAGCAACTTTACAACCACAGAGGCTTGAAGAAATCAAGATTAAACAAATCGGAATTAATTTAGTTTAATCA
ACATATTGCAGTCTTCACATCCCGTTCAAGCTCAAATGAATGACTTGTATAGATAACCCAGCCTTGCTAACTGATTGCTG
TTGTTTTTTTGTTCCATCGTGTGTAAACTCTATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49940.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis