Browse Element(s) Details


Os.50233.1.S1_at

Description gb:AK120258.1
DB_XREF= gi:37989881
TID=Os.50233.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50233 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013046A20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013046A20, full insert sequence.
FL= gb:AK120258.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1252011/11SWIM zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12490Os.20010.1.S1_at9/117+7119023..7124714KH domain-containing protein, putative, expressed
LOC_Os07g12500Os.35344.18.S1_x_at10/117+7129728..7135775transposon protein, putative, Mutator sub-class
LOC_Os07g12500Os.35344.3.S1_x_at9/117+7129728..7135775transposon protein, putative, Mutator sub-class
LOC_Os07g12500OsAffx.22940.5.S1_x_at3/117+7129728..7135775transposon protein, putative, Mutator sub-class
LOC_Os07g12510OsAffx.22431.1.S1_s_at11/117+7137873..7139079AP2 domain containing protein, expressed
LOC_Os07g12520Os.50233.1.S1_at11/117+7143853..7148040SWIM zinc finger family protein, putative, expressed
LOC_Os07g12530Os.26832.1.S1_at10/117+7151157..7156206ABC1 family protein, expressed
LOC_Os07g12540OsAffx.16228.1.S1_at11/117+7159169..7160548expressed protein
LOC_Os07g12550OsAffx.29680.1.S1_at8/117+7161453..7163595hypothetical protein
LOC_Os07g12560Os.29745.1.S2_at11/117+7163854..7166029F-box domain containing protein, expressed
LOC_Os07g12560Os.29745.1.S1_at11/117+7163854..7166029F-box domain containing protein, expressed
LOC_Os07g12570Os.52501.1.S1_x_at10/117+7166700..7169696expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50233.1.S1_at--92--2911Chr07:7147523..7147547 (25 bp)
AAGGTAGCCCTACGGCGACGCAAAT
LOC_Os07g12520
Os.50233.1.S1_at--527--5771Chr07:7147539..7147563 (25 bp)
GACGCAAATCACACAACCTTCTGAA
LOC_Os07g12520
Os.50233.1.S1_at--685--5011Chr07:7147590..7147614 (25 bp)
GCAGGAACCTCTTGATCGTCGGGAA
LOC_Os07g12520
Os.50233.1.S1_at--1154--5371Chr07:7147683..7147707 (25 bp)
GAAGCAACCTTCTGAAACTGAGAGT
LOC_Os07g12520
Os.50233.1.S1_at--1035--6071Chr07:7147704..7147728 (25 bp)
GAGTAGGCCAGCAATTGATCAGCAG
LOC_Os07g12520
Os.50233.1.S1_at--204--8851Chr07:7147719..7147743 (25 bp)
TGATCAGCAGGAACCTCTTCATCAT
LOC_Os07g12520
Os.50233.1.S1_at--979--9391Chr07:7147743..7147767 (25 bp)
TCGTCAAGAAAACCCTGCTCACAAG
LOC_Os07g12520
Os.50233.1.S1_at--1148--651Chr07:7147813..7147837 (25 bp)
ATGCAAGTCATGGAACCTTCTGAAA
LOC_Os07g12520
Os.50233.1.S1_at--213--5251Chr07:7147849..7147873 (25 bp)
GAATGATTCTTCTGCTTAGGTTATA
LOC_Os07g12520
Os.50233.1.S1_at--248--10051Chr07:7147892..7147916 (25 bp)
TAGGTGGTACCTGACTCCTTTATGA
LOC_Os07g12520
Os.50233.1.S1_at--952--1011Chr07:7147948..7147972 (25 bp)
AGGTCTGTACATACTGTGTTACCGA
LOC_Os07g12520
Target Sequence 
AAGGTAGCCCTACGGCGACGCAAATCACACAACCTTCTGAAACCGAAAGCAGTCAAGCAACTGATCTGCAGGAACCTCTT
GATCGTCGGGAAAATCGTGCTCCCAAGAAATCGAAGTCAAAAGAAGCTTCTGATGGGGGAAAGGCTAATGCAAGGCAAGC
GAAGCAACCTTCTGAAACTGAGAGTAGGCCAGCAATTGATCAGCAGGAACCTCTTCATCATCGTCAAGAAAACCCTGCTC
ACAAGAAAACGAAGTCAGGAGAAGCTTCTGATGGCGAAGAAACTATGGCAATGCAAGTCATGGAACCTTCTGAAACTGAA
TGAACCGAATGATTCTTCTGCTTAGGTTATATGAGATGTTGTAGGAATGTAGGTGGTACCTGACTCCTTTATGAGCTTAG
GCTATTGTTTTGTTTGAATATTAGGAGGTCTGTACATACTGTGTTACCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50233.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis