Browse Element(s) Details


Os.5027.1.S1_at

Description gb:AK107055.1
DB_XREF= gi:32992264
TID=Os.5027.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5027 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-121-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-121-D06, full insert sequence.
FL= gb:AK064897.1 gb:AK107055.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4185011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41810Os.10112.1.S1_at11/118+26273183..2627568460S ribosomal protein L17, putative, expressed
LOC_Os08g41820OsAffx.29627.2.S1_at11/118+26281044..26283096Exo70 exocyst complex subunit family protein, expressed
LOC_Os08g41830Os.46015.1.A1_s_at11/118+26284917..26289847Sulfite oxidase, putative, expressed
LOC_Os08g41830Os.18635.1.S1_at11/118+26284917..26289847Sulfite oxidase, putative, expressed
LOC_Os08g41840NANA8+26289375..26291137expressed protein
LOC_Os08g41850Os.5027.1.S1_at11/118+26298314..26300096hypothetical protein
LOC_Os08g41850Os.5027.1.S2_at3/118+26298314..26300096hypothetical protein
LOC_Os08g41860NANA8+26301832..26302287hypothetical protein
LOC_Os08g41870OsAffx.28601.3.S1_x_at9/118+26303304..26304489hypothetical protein
LOC_Os08g41870OsAffx.28601.3.S1_at8/118+26303304..26304489hypothetical protein
LOC_Os08g41880Os.10305.1.S1_at11/118+26306752..26312631Metallophosphatase, putative, expressed
LOC_Os08g41890Os.6279.1.A1_at11/118+26315575..26320118microtubule associated protein family protein, putative, expressed
LOC_Os08g41900Os.46763.1.S1_at11/118+26319288..26329702expressed protein
LOC_Os08g41900OsAffx.2904.1.S1_at1/118+26319288..26329702expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5027.1.S1_at--736--4292Chr08:26299168..26299192 (25 bp)
CCTCTTACGGTTTGTGGCTGCAATG
LOC_Os08g41850
Os.5027.1.S1_at--939--852Chr08:26299146..26299170 (25 bp)
ATGGCTAGCAGTGTATCTGGTTCAA
LOC_Os08g41850
Os.5027.1.S1_at--685--3592Chr08:26299100..26299124 (25 bp)
CATTCTTCTGATGACCACACTGGAT
LOC_Os08g41850
Os.5027.1.S1_at--1122--3292Chr08:26299085..26299109 (25 bp)
CACACTGGATCTGGTCATTTGTTGC
LOC_Os08g41850
Os.5027.1.S1_at--1039--6932Chr08:26299030..26299054 (25 bp)
GTAGTCATTATCTCCATGCTTTCCT
LOC_Os08g41850
Os.5027.1.S1_at--557--632Chr08:26299015..26299039 (25 bp)
ATGCTTTCCTTCATGCTCAGTGAAT
LOC_Os08g41850
Os.5027.1.S1_at--324--2432Chr08:26298975..26298999 (25 bp)
AAAACTGGTTGGTGCTCTTGCAGGT
LOC_Os08g41850
Os.5027.1.S1_at--900--4732Chr08:26298883..26298907 (25 bp)
GCTGTTTGTTTCATAGCTTCTCAAA
LOC_Os08g41850
Os.5027.1.S1_at--506--8311Chr08:26298826..26298850 (25 bp)
GGCTAGAGCTACAGTGTGGACCAAT
LOC_Os08g41850
Os.5027.1.S1_at--888--3192Chr08:26298805..26298829 (25 bp)
CAATGATGGCACTTGGAGCTGGGTA
LOC_Os08g41850
Os.5027.1.S1_at--898--7872Chr08:26298607..26298631 (25 bp)
GGTTATTCAATCTAGGTCCAGAGTT
LOC_Os08g41850
Target Sequence 
CCTCTTACGGTTTGTGGCTGCAATGGCTAGCAGTGTATCTGGTTCAAGAAGTCTTNTCGACGTTGTTNCATTCTTCTGAT
GACCACACTGGATCTGGTCATTTGTTGCATGATAGAGGATCCATCANGGTGTATTCATGTAGTCATTATCTCCATGCTTT
CCTTCATGCTCAGTGAATGGAGACTGAAGACTGAAAACTGGTTGGTGCTCTTGCAGGTGAGATTGAAGATATAAAATTGG
TCNGGGCTCTGGTAAGCTTTGTAATGGAGAAATTTTGCAGCTCTAGCTGTTTGTTTCATAGCTTCTCAAATTGCTGGGAA
AAGGTAGAGATGAAAACATGNTGGCTAGAGCTACAGTGTGGACCAATGATGGCACTTGGAGCTGGGTAAGGACCATTGAT
GATACTAGAATTTAGAGATGTGTTTGCNCATGCTATACTCTACATGTTTTATATTTCCATTGCCTTTTTTTTCCTTTTCT
TTTTTCATTTCTTCTTGAAGGTATTGGNTCAGAGAGAGCCAACTTAGGTTTTAGTGTACCTTTATATTGGTAAAGTCACT
TGGTTATTCAATCTAGGTCCAGAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5027.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis