Browse Element(s) Details


Os.50276.1.S1_at

Description gb:AK120492.1
DB_XREF= gi:37990115
TID=Os.50276.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50276 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-019-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013119L11, full insert sequence.
FL= gb:AK058748.1 gb:AK120492.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5051011/11O-acetyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50480Os.8172.1.S1_at11/115+28857095..28865111expressed protein
LOC_Os05g50490Os.5652.1.S1_at11/115+28867581..28869482glucan endo-1,3-beta-glucosidase, putative, expressed
LOC_Os05g50500OsAffx.4677.1.S1_s_at11/115+28874263..28875380expressed protein
LOC_Os05g50510Os.50276.1.S1_at11/115+28876953..28882597O-acetyltransferase, putative, expressed
LOC_Os05g50510Os.18001.3.S1_at3/115+28876953..28882597O-acetyltransferase, putative, expressed
LOC_Os05g50510Os.18001.3.S1_x_at1/115+28876953..28882597O-acetyltransferase, putative, expressed
LOC_Os05g50510OsAffx.17241.1.S1_at1/115+28876953..28882597O-acetyltransferase, putative, expressed
LOC_Os05g50520NANA5+28888150..28892854retrotransposon protein, putative, unclassified
LOC_Os05g50530OsAffx.19258.2.S1_x_at10/115+28893468..28896400hypothetical protein
LOC_Os05g50530OsAffx.24518.2.S1_x_at2/115+28893468..28896400hypothetical protein
LOC_Os05g50530Os.57200.1.S1_x_at1/115+28893468..28896400hypothetical protein
LOC_Os05g50540Os.28943.1.S1_x_at4/115+28896949..28898187retrotransposon protein, putative, unclassified
LOC_Os05g50550Os.18305.1.S2_at11/115+28901377..28904741Polyprenyl synthetase family protein, expressed
LOC_Os05g50550Os.18305.1.S1_at11/115+28901377..28904741Polyprenyl synthetase family protein, expressed
LOC_Os05g50560Os.52787.1.S1_at7/115+28906389..28912094mitogen-activated protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016413molecular_functionO-acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50276.1.S1_at--917--3051Chr05:28877615..28877719 (25 bp)
AATCTATCTTCTTCTATCATACCGG
LOC_Os05g50510
Os.50276.1.S1_at--922--8071Chr05:28877563..28877587 (25 bp)
GGAGCTTTTATTCCCAGTAGAGACA
LOC_Os05g50510
Os.50276.1.S1_at--1143--6571Chr05:28877507..28877531 (25 bp)
GATTGCCATATCTGCATGCCTGTAT
LOC_Os05g50510
Os.50276.1.S1_at--905--591Chr05:28877492..28877516 (25 bp)
ATGCCTGTATTTCTGCTCACTTATT
LOC_Os05g50510
Os.50276.1.S1_at--658--7211Chr05:28877314..28877338 (25 bp)
GTCGTTCCTGAAAATTGTGTGCTTG
LOC_Os05g50510
Os.50276.1.S1_at--769--10831Chr05:28877300..28877324 (25 bp)
TTGTGTGCTTGGTATCTGGTGGTAA
LOC_Os05g50510
Os.50276.1.S1_at--809--2811Chr05:28877277..28877301 (25 bp)
AAGATATTCAGCTCAGGCCTCAATT
LOC_Os05g50510
Os.50276.1.S1_at--377--10651Chr05:28877223..28877247 (25 bp)
TTCCCATGAAGGACCTGCCGATCTT
LOC_Os05g50510
Os.50276.1.S1_at--90--1251Chr05:28877104..28877128 (25 bp)
AGTTGTGCATTCTTTGGGAGTTGTA
LOC_Os05g50510
Os.50276.1.S1_at--108--6951Chr05:28877082..28877106 (25 bp)
GTAGATGCTTTCCTAAGTTGATACA
LOC_Os05g50510
Os.50276.1.S1_at--813--3791Chr05:28877041..28877065 (25 bp)
CTCCCCTCAAAGCACTGTAACATGT
LOC_Os05g50510
Target Sequence 
AATCTATCTTCTTCTATCATACCGGGTGTTTGAGATCACAGGTGTACTGAAGGGAGCTTTTATTCCCAGTAGAGACAACA
ATCGGCTATATCAAAATTTTATTGCAGGGATTGCCATATCTGCATGCCTGTATTTCTGCTCACTTATTCTTGTGAAAATT
ACTATTGTATAGGTAGAATTGCCAAGTAAATGACCTTGATAGAAGGTCGTTCCTGAAAATTGTGTGCTTGGTATCTGGTG
GTAAGATATTCAGCTCAGGCCTCAATTCCATTTTGCATTTGGAGGTAAAGATACAGTTCCCATGAAGGACCTGCCGATCT
TNTAGTTGGGAATTGAATTGCCAGAGGATGTAGGTATAGAAGTCAAATTTTGATTTATCATTTCCCCCATTTAAAACACN
GTACACAGTTAGCGAAGTTGTGCATTCTTTGGGAGTTGTAGATGCTTTCCTAAGTTGATACAACAGTGTAAGAATTTCCT
CCCCTCAAAGCACTGTAACATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50276.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis