Browse Element(s) Details


Os.50463.1.S1_at

Description gb:AK121294.1
DB_XREF= gi:37990917
TID=Os.50463.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50463 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023110C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023110C02, full insert sequence.
FL= gb:AK121294.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0930010/11expressed protein
LOC_Os01g461691/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g09260Os.47964.1.S1_at11/114+4904092..4905546Transferase family protein, expressed
LOC_Os04g09260OsAffx.20808.1.S1_x_at1/114+4904092..4905546Transferase family protein, expressed
LOC_Os04g09270OsAffx.8244.1.S1_at3/114+4908424..4911340retrotransposon protein, putative, unclassified
LOC_Os04g09284NANA4+4911970..4918176retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g09300Os.50463.1.S1_at10/114+4921901..4922499expressed protein
LOC_Os04g09310Os.10827.1.S1_x_at6/114+4924504..4928088transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g09310Os.46055.2.S1_x_at3/114+4924504..4928088transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g09310OsAffx.18122.1.S1_x_at1/114+4924504..4928088transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g09320NANA4+4928709..4929095hypothetical protein
LOC_Os04g09330OsAffx.25936.7.S1_s_at7/114+4934888..4940061hypothetical protein
LOC_Os04g09330OsAffx.25936.2.S1_x_at6/114+4934888..4940061hypothetical protein
LOC_Os04g09330OsAffx.25936.1.S1_s_at6/114+4934888..4940061hypothetical protein
LOC_Os04g09330Os.2358.1.S1_at4/114+4934888..4940061hypothetical protein
LOC_Os04g09330OsAffx.25936.5.S1_x_at2/114+4934888..4940061hypothetical protein
LOC_Os04g09330OsAffx.22548.1.S1_at1/114+4934888..4940061hypothetical protein
LOC_Os04g09330OsAffx.25936.1.S1_at1/114+4934888..4940061hypothetical protein
LOC_Os04g09340NANA4+4944873..4945157hypothetical protein
LOC_Os04g09350Os.37024.1.S1_s_at11/114+4945533..4955300expressed protein
LOC_Os04g09350Os.6217.1.S1_at11/114+4945533..4955300expressed protein
LOC_Os04g09350Os.36350.1.A1_at11/114+4945533..4955300expressed protein
LOC_Os04g09350Os.6217.1.S2_at11/114+4945533..4955300expressed protein
LOC_Os04g09350Os.52051.1.S1_x_at3/114+4945533..4955300expressed protein
LOC_Os04g09350Os.51910.1.S1_x_at2/114+4945533..4955300expressed protein
LOC_Os04g09350Os.52051.1.S1_at2/114+4945533..4955300expressed protein
LOC_Os04g09350Os.51910.1.S1_at1/114+4945533..4955300expressed protein
LOC_Os04g09350Os.38269.1.S1_x_at1/114+4945533..4955300expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50463.1.S1_at--52--7471Chr04:4921932..4921956 (25 bp)
GTGTGCGCTGGTGTACAACACGGAA
LOC_Os04g09300
Os.50463.1.S1_at--1148--3331Chr04:4921950..4921974 (25 bp)
CACGGAAATTTCTTGTTTATTCATC
LOC_Os04g09300
Os.50463.1.S1_at--435--3813Chr04:4921981..4922005 (25 bp)
CTCCGTCAGTGCATCTTCTTTGTGT
LOC_Os04g09300
Os.50463.1.S1_at--390--8671Chr04:4922009..4922033 (25 bp)
TGTGTGAGTTCCATCGACTGAGAGA
LOC_Os04g09300
Os.50463.1.S1_at--268--1371Chr04:4922043..4922220 (25 bp)
AGAGCCGTGTGTGCTAGTGTGCCGT
LOC_Os04g09300
Os.50463.1.S1_at--512--4351Chr04:4922278..4922302 (25 bp)
CCACCTTTCAGCCTATGAAACGATG
LOC_Os04g09300
Os.50463.1.S1_at--855--2391Chr04:4922383..4922407 (25 bp)
AAGAACAGGGAGACATGGCAAAAGT
LOC_Os04g09300
Os.50463.1.S1_at--1004--5651Chr04:4922394..4922418 (25 bp)
GACATGGCAAAAGTAGGATCTGGAT
LOC_Os04g09300
Os.50463.1.S1_at--570--10071Chr04:4922407..4922431 (25 bp)
TAGGATCTGGATGGGAGATCACGCT
LOC_Os04g09300
Os.50463.1.S1_at--475--8051Chr04:4922420..4922444 (25 bp)
GGAGATCACGCTGGAATTAAATTTA
LOC_Os04g09300
Os.50463.1.S1_at--229--10173Chr06:22053065..22053085 (21 bp)
TATAAATATACCGTCGATCTCGTAC
NONE
Target Sequence 
GTGTGCGCTGGTGTACAACACGGAAATTTCTTGTTTATTCATCTTCTTCCTCCGTCAGTGCATCTTCTTTGTGTGTGTGT
GTGAGTTCCATCGACTGAGAGAGAGGGAGAGAGAGCCGTGTGTGCTAGTGTGCCGTCGCGCGCCACGGGCCCTTCTCTCC
GCTGCCAATCGGCTGCCTCCCGGCCTCCGCTGGCCACCTTTCAGCCTATGAAACGATGAGGAAGAGAGGAAAAGAGGAGG
GTGGCCGCCGCCCTTCCGGACCACGCCGCACCTCTCCCCGCCGCCATTCTCAGCGACCAAGAACAGGGAGACATGGCAAA
AGTAGGATCTGGATGGGAGATCACGCTGGAATTAAATTTAAAAATATACTTTTCATTCAATTTTTTCTCATGAATATTTG
AGATGTAAAATTTTTTCTATAAATATACCGTCGATCTCGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50463.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis