Browse Element(s) Details


Os.50482.1.S1_at

Description gb:AK121380.1
DB_XREF= gi:37991003
TID=Os.50482.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50482 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023127G18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023127G18, full insert sequence.
FL= gb:AK121380.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1134011/11leucine-rich repeat resistance protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11300OsAffx.25053.1.S1_at11/113+5793553..5795613expressed protein
LOC_Os03g11310Os.50947.1.S1_x_at11/113+5796992..5799853expressed protein
LOC_Os03g11310Os.24634.1.A1_s_at11/113+5796992..5799853expressed protein
LOC_Os03g11310OsAffx.12824.1.S1_at11/113+5796992..5799853expressed protein
LOC_Os03g11320Os.5477.1.S2_at11/113+5802770..5807225Heparanase-like protein 2 precursor, putative, expressed
LOC_Os03g11320Os.5477.1.S1_at11/113+5802770..5807225Heparanase-like protein 2 precursor, putative, expressed
LOC_Os03g11330OsAffx.12825.1.S1_s_at11/113+5808129..5813883Glycosyl transferase family 8 protein, expressed
LOC_Os03g11340Os.12674.1.S1_s_at11/113+5819824..5823946leucine-rich repeat resistance protein, putative, expressed
LOC_Os03g11340Os.50482.1.S1_at11/113+5819824..5823946leucine-rich repeat resistance protein, putative, expressed
LOC_Os03g11350OsAffx.2198.4.S1_at11/113+5828014..5829498Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed
LOC_Os03g11360Os.16437.1.S1_at11/113+5831689..5836578Leucine Rich Repeat family protein, expressed
LOC_Os03g11370Os.7036.1.S1_at11/113+5837342..5839072B3 DNA binding domain containing protein, expressed
LOC_Os03g11380OsAffx.25055.1.S1_s_at11/113+5839832..5843006SNARE domain containing protein, expressed
LOC_Os03g11380OsAffx.25055.1.S1_at11/113+5839832..5843006SNARE domain containing protein, expressed
LOC_Os03g11380Os.51936.1.S1_at11/113+5839832..5843006SNARE domain containing protein, expressed
LOC_Os03g11390OsAffx.25056.1.S1_at10/113+5843172..5843815hypothetical protein
LOC_Os03g11400OsAffx.3200.1.S1_s_at11/113+5844753..5848379Targeting protein for Xklp2 containing protein, expressed
LOC_Os03g11400Os.51997.1.S1_at11/113+5844753..5848379Targeting protein for Xklp2 containing protein, expressed
LOC_Os03g11400OsAffx.3200.1.S1_at11/113+5844753..5848379Targeting protein for Xklp2 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50482.1.S1_at--953--7051Chr03:5820400..5820424 (25 bp)
GTAAGCTGGCTTTAGAATTTCTACT
LOC_Os03g11340
Os.50482.1.S1_at--725--5211Chr03:5820386..5820410 (25 bp)
GAATTTCTACTCTCACGACATTATT
LOC_Os03g11340
Os.50482.1.S1_at--791--5251Chr03:5820350..5820374 (25 bp)
GAATCTGCTCTGTTTTAGGTTTACT
LOC_Os03g11340
Os.50482.1.S1_at--1129--10071Chr03:5820335..5820359 (25 bp)
TAGGTTTACTTAGGCGCACACTTTT
LOC_Os03g11340
Os.50482.1.S1_at--465--7031Chr03:5820002..5820026 (25 bp)
GTAAAGTCCAGAGCACTGCTGCTAT
LOC_Os03g11340
Os.50482.1.S1_at--641--3831Chr03:5819984..5820008 (25 bp)
CTGCTATCCTGTCATCCAAGAGTAT
LOC_Os03g11340
Os.50482.1.S1_at--4--3491Chr03:5819939..5819963 (25 bp)
CAGGTTGTATTGCATTTCTTGTAAC
LOC_Os03g11340
Os.50482.1.S1_at--117--5031Chr03:5819890..5819914 (25 bp)
GCAGTTCAGCTGTATTGCCAGCACA
LOC_Os03g11340
Os.50482.1.S1_at--139--9211Chr03:5819875..5819899 (25 bp)
TGCCAGCACATTTGCATGGCACCGA
LOC_Os03g11340
Os.50482.1.S1_at--470--851Chr03:5819860..5819884 (25 bp)
ATGGCACCGACAGTCCTGGTGTAAT
LOC_Os03g11340
Os.50482.1.S1_at--249--2651Chr03:5819833..5819857 (25 bp)
AACCAGTGTGCTCAATGATATTTTT
LOC_Os03g11340
Target Sequence 
GTAAGCTGGCTTTAGAATTTCTACTCTCACGACATTATTATTTCATACTTGAATCTGCTCTGTTTTAGGTTTACTTAGGC
GCACACTTTTTTTTTTTTTTGATGCAGGTACATTGAAGGAAACCAATTTAGACCAGGAAGCAAATCAAAAGGAACGCACA
AGGTGCTTGAATTACCTGATGCTGACATCTTAGTTTAACAACTGTTTATTCTGTGACGATAGCAGAGCGGCTACCGTTCT
ACATCTCCTCAGCATGCACCAACAAAAATGTATGCATGTTTTTAGGATATATACGATATATGTATCAGTAGTACAGACAC
TGTTTCTCACAGCACTGTTCGAGGACAAGTTCACACACACAAAAGGCCACTTGCAAACCAGAAAAAGAAAAAAAAATTGT
AAAGTCCAGAGCACTGCTGCTATCCTGTCATCCAAGAGTATGTTTTCATTAGATGAGTGTACAGGTTGTATTGCATTTCT
TGTAACTTAGTACTACTGTGTAATGGAGATGCAGTTCAGCTGTATTGCCAGCACATTTGCATGGCACCGACAGTCCTGGT
GTAATGTAACCAGTGTGCTCAATGATATTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50482.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis