Browse Element(s) Details


Os.50598.1.S1_at

Description gb:AK122005.1
DB_XREF= gi:37991628
TID=Os.50598.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50598 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033110O14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033110O14, full insert sequence.
FL= gb:AK122005.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0337011/11Harpin-induced protein 1 containing protein, expressed
LOC_Os11g036001/11Harpin-induced protein 1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03320OsAffx.31562.2.S1_s_at11/1112+1283830..1285605hypothetical protein
LOC_Os12g03330OsAffx.31563.1.S1_at11/1112+1290584..1290910hypothetical protein
LOC_Os12g03340Os.27524.1.S1_at11/1112+1291701..1299940expressed protein
LOC_Os12g03340Os.27524.2.S1_x_at8/1112+1291701..1299940expressed protein
LOC_Os12g03350Os.50919.1.S1_at4/1112+1301340..1302288hypothetical protein
LOC_Os12g03360Os.50942.1.S1_at6/1112+1304139..1305879Nse1 non-SMC component of SMC5-6 complex family protein
LOC_Os12g03370Os.50598.1.S1_at11/1112+1308547..1309703Harpin-induced protein 1 containing protein, expressed
LOC_Os12g03380OsAffx.30177.4.S1_at11/1112+1313533..1314090expressed protein
LOC_Os12g03380OsAffx.30177.1.S1_x_at2/1112+1313533..1314090expressed protein
LOC_Os12g03380Os.8747.3.S1_x_at2/1112+1313533..1314090expressed protein
LOC_Os12g03380Os.33750.2.S1_x_at1/1112+1313533..1314090expressed protein
LOC_Os12g03390OsAffx.31564.2.S1_at11/1112+1314753..1316248F-box domain containing protein, expressed
LOC_Os12g03400Os.6369.1.S1_at11/1112+1316605..1318869expressed protein
LOC_Os12g03410OsAffx.30800.1.S1_at11/1112+1319292..1325834Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os12g03410OsAffx.30800.2.S1_x_at2/1112+1319292..1325834Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os12g03420NANA12+1331912..1332472VQ motif family protein

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Gene Ontology Classification
GO idTypeName
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0009863biological_processsalicylic acid mediated signaling pathway
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50598.1.S1_at--554--1912Chr12:1309058..1309082 (25 bp)
ACGTGACGGTGTTCTCGACGGCGTT
LOC_Os12g03370
Os.50598.1.S1_at--732--9171Chr12:1308962..1308986 (25 bp)
TGCCCCTGGCTGTGGACGCGATCGT
LOC_Os12g03370
Os.50598.1.S1_at--178--7311Chr12:1308829..1308853 (25 bp)
GTGCATGGTCAAGGTCCGGCCGCTC
LOC_Os12g03370
Os.50598.1.S1_at--928--7852Chr12:1308751..1308775 (25 bp)
GGTAGTACATTAACGGCTACAGCCT
LOC_Os12g03370
Os.50598.1.S1_at--974--1932Chr12:1308739..1308763 (25 bp)
ACGGCTACAGCCTAGTATAGCTAGT
LOC_Os12g03370
Os.50598.1.S1_at--102--4872Chr12:1308720..1308744 (25 bp)
GCTAGTAACAGCTGTGCATTGAACA
LOC_Os12g03370
Os.50598.1.S1_at--972--1171Chr12:1308683..1308707 (25 bp)
AGTACTTATTATACCTGTGAATTGA
LOC_Os12g03370
Os.50598.1.S1_at--207--7711Chr12:1308629..1308653 (25 bp)
GGGTGCATTTCAAGCTGTTGATGAG
LOC_Os12g03370
Os.50598.1.S1_at--393--7671Chr12:1308604..1308628 (25 bp)
GGGATTAGTGGATTACCACCAGTGT
LOC_Os12g03370
Os.50598.1.S1_at--245--10472Chr12:1308592..1308616 (25 bp)
TTACCACCAGTGTAGCATTTTGCAT
LOC_Os12g03370
Os.50598.1.S1_at--607--4951Chr12:1308578..1308602 (25 bp)
GCATTTTGCATACTTGCAGTTGCAG
LOC_Os12g03370
Target Sequence 
ACGTGACGGTGTTCTCGACGGCGTTGGCCGGAGGAGGCGTGAGCCTCACGGAGGAGCAGAGGAAGCAGCTCGCCGCGGAT
CAGGCCGCCGGCGCGGTGCCCCTGGCTGTGGACGCGATCGTGCCGGTGAGGTTGAGGTTCGGGAAGGTGCTCCGGACGTG
GACGGTGGACGTGAAGGCGAGGTGCGAGGTGACGGTGAACAAGCTGGCGGCGGCGCCGGCGAACAGGGGGTGCATGGTCA
AGGTCCGGCCGCTCTGGTGGTGGTGGTGATCGCCGGCGGCGGCGGCGCCGCCGCTGATGGTTGGATGGGTAGTACATTAA
CGGCTACAGCCTAGTATAGCTAGTAACAGCTGTGCATTGAACAGAGAGATATTACAGTACTTATTATACCTGTGAATTGA
ATTAATTTCATAATTAGTGTCCAATTTTGGGGTGCATTTCAAGCTGTTGATGAGGGGATTAGTGGATTACCACCAGTGTA
GCATTTTGCATACTTGCAGTTGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50598.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis