Browse Element(s) Details


Os.50721.1.S1_at

Description gb:AJ532520.1
DB_XREF= gi:27527597
TID=Os.50721.1
CNT=1
FEA=RNA
TIER=ConsEnd
STK=0
UG=Os.50721 (NCBI UniGene Cluster)
UG_TITLE=Z274 snoRNA
DEF=Oryza sativa Z274 snoRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5517011/11La domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55120OsAffx.23797.1.S1_at11/111+32044890..32046656hypothetical protein
LOC_Os01g55130NANA1+32049066..32049407hypothetical protein
LOC_Os01g55140OsAffx.2336.2.S1_at10/111+32051125..32052091hypothetical protein
LOC_Os01g55150Os.55684.1.S1_at10/111+32054863..32057220bZIP transcription factor family protein, expressed
LOC_Os01g55150OsAffx.9432.1.S1_at8/111+32054863..32057220bZIP transcription factor family protein, expressed
LOC_Os01g55160Os.34913.1.S1_at11/111+32058836..32059797expressed protein
LOC_Os01g55170Os.50721.1.S1_at11/111+32064904..32069629La domain containing protein, expressed
LOC_Os01g55170Os.9803.1.S1_a_at10/111+32064904..32069629La domain containing protein, expressed
LOC_Os01g55180OsAffx.11610.2.S1_at11/111+32070709..32075429hypothetical protein
LOC_Os01g55190Os.8252.1.S1_s_at11/111+32076028..32080215expressed protein
LOC_Os01g55190Os.8252.1.S1_at11/111+32076028..32080215expressed protein
LOC_Os01g55190Os.37713.1.S1_at1/111+32076028..32080215expressed protein
LOC_Os01g55200Os.33391.1.S1_at11/111+32088071..32090735Potassium channel KAT1, putative, expressed
LOC_Os01g55200Os.33391.2.S1_x_at11/111+32088071..32090735Potassium channel KAT1, putative, expressed
LOC_Os01g55210OsAffx.23798.2.S1_at11/111+32091409..32091951F-box domain containing protein
LOC_Os01g55210OsAffx.23798.1.S1_s_at11/111+32091409..32091951F-box domain containing protein
LOC_Os01g55220NANA1+32093478..32093690hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50721.1.S1_at--788--5271Chr01:32068545..32068569 (25 bp)
GAGAGGCATTTACATAGGTACTCCT
LOC_Os01g55170
Os.50721.1.S1_at--197--8291Chr01:32068541..32068565 (25 bp)
GGCATTTACATAGGTACTCCTGGTG
LOC_Os01g55170
Os.50721.1.S1_at--1071--171Chr01:32068538..32068562 (25 bp)
ATTTACATAGGTACTCCTGGTGCAG
LOC_Os01g55170
Os.50721.1.S1_at--1112--9871Chr01:32068535..32068559 (25 bp)
TACATAGGTACTCCTGGTGCAGCTT
LOC_Os01g55170
Os.50721.1.S1_at--876--271Chr01:32068532..32068556 (25 bp)
ATAGGTACTCCTGGTGCAGCTTTCT
LOC_Os01g55170
Os.50721.1.S1_at--182--1031Chr01:32068530..32068554 (25 bp)
AGGTACTCCTGGTGCAGCTTTCTTT
LOC_Os01g55170
Os.50721.1.S1_at--252--9911Chr01:32068527..32068551 (25 bp)
TACTCCTGGTGCAGCTTTCTTTAGT
LOC_Os01g55170
Os.50721.1.S1_at--780--9271Chr01:32068524..32068548 (25 bp)
TCCTGGTGCAGCTTTCTTTAGTTGT
LOC_Os01g55170
Os.50721.1.S1_at--1020--7331Chr01:32068519..32068543 (25 bp)
GTGCAGCTTTCTTTAGTTGTGCCGA
LOC_Os01g55170
Os.50721.1.S1_at--159--3371Chr01:32068516..32068540 (25 bp)
CAGCTTTCTTTAGTTGTGCCGAGAA
LOC_Os01g55170
Os.50721.1.S1_at--732--3671Chr01:32068513..32068537 (25 bp)
CTTTCTTTAGTTGTGCCGAGAAGCT
LOC_Os01g55170
Target Sequence 
GAGAGGCATTTACATAGGTACTCCTGGTGCAGCTTTCTTTAGTTGTGCCGAGAAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50721.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis