Browse Element(s) Details


Os.50836.1.S1_at

Description gb:AK058880.1
DB_XREF= gi:32968898
TID=Os.50836.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50836 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-007-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-007-B05, full insert sequence.
FL= gb:AK058880.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1848011/11lipase class 3 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18440OsAffx.22940.2.S1_s_at8/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440OsAffx.22940.1.S1_s_at7/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440OsAffx.22940.5.S1_x_at6/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440OsAffx.22940.3.S1_x_at6/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440OsAffx.22940.2.S1_at3/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440OsAffx.22940.5.S1_at2/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440Os.35344.3.S1_x_at2/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440Os.35344.18.S1_x_at2/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440OsAffx.31552.2.S1_at1/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18450Os.17566.1.S1_at10/112+10739449..10747065GTP-binding protein TypA/BipA homolog, putative, expressed
LOC_Os02g18460OsAffx.24305.1.S1_at11/112+10747493..10749004expressed protein
LOC_Os02g18470OsAffx.24306.1.S1_at11/112+10752547..10754223hypothetical protein
LOC_Os02g18480Os.50836.1.S1_at11/112+10758955..10762458lipase class 3 family protein, putative, expressed
LOC_Os02g18490OsAffx.24307.1.S1_at8/112+10764507..10767400hypothetical protein
LOC_Os02g18490OsAffx.24307.2.S1_at4/112+10764507..10767400hypothetical protein
LOC_Os02g18500OsAffx.12101.1.S1_at10/112+10772433..10773887Chlorophyllase-2, chloroplast precursor, putative
LOC_Os02g18510OsAffx.2667.1.S1_at11/112+10776282..10780756NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004806molecular_functiontriacylglycerol lipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50836.1.S1_at--1154--3491Chr02:10761990..10762014 (25 bp)
CATGGACGCCATATCTGTTTGTCAA
LOC_Os02g18480
Os.50836.1.S1_at--945--10511Chr02:10762033..10762057 (25 bp)
TTCAGAGTACATCGGCTACTTCCAG
LOC_Os02g18480
Os.50836.1.S1_at--468--2691Chr02:10762100..10762124 (25 bp)
AAGCTCGCAACCCAAAATTCCATAG
LOC_Os02g18480
Os.50836.1.S1_at--697--791Chr02:10762150..10762174 (25 bp)
ATGGGAATCGGAACCACTGCACCTT
LOC_Os02g18480
Os.50836.1.S1_at--1120--1731Chr02:10762170..10762194 (25 bp)
ACCTTCTTCCATCTGCAGACTTAAT
LOC_Os02g18480
Os.50836.1.S1_at--232--9751Chr02:10762191..10762215 (25 bp)
TAATTGTCAACGTAAGCCCTTCACC
LOC_Os02g18480
Os.50836.1.S1_at--464--10471Chr02:10762210..10762234 (25 bp)
TTCACCGGACTTCAAATATGCTCAT
LOC_Os02g18480
Os.50836.1.S1_at--938--491Chr02:10762284..10762308 (25 bp)
ATCGGTACTCTGTAGGTGCATGACA
LOC_Os02g18480
Os.50836.1.S1_at--908--10431Chr02:10762323..10762347 (25 bp)
TTAGGAGACCCTTCTTACACTTTCG
LOC_Os02g18480
Os.50836.1.S1_at--190--7911Chr02:10762360..10762384 (25 bp)
GGTTCGTTCCACTCTATTGTAGCTG
LOC_Os02g18480
Os.50836.1.S1_at--920--5431Chr02:10762411..10762435 (25 bp)
GAACCTCTGATTCTGTTGACATGAA
LOC_Os02g18480
Target Sequence 
CATGGACGCCATATCTGTTTGTCAATCCAGGAGACCATATCTGTTCAGAGTACATCGGCTACTTCCAGCATCGGAAGAAC
ATGGAGGATCTCGGTGCTGGATTTATCGAGAAGCTCGCAACCCAAAATTCCATAGGAGATCTGTTTTACAAGGCATTAGG
ATGGGAATCGGAACCACTGCACCTTCTTCCATCTGCAGACTTAATTGTCAACGTAAGCCCTTCACCGGACTTCAAATATG
CTCATGGCATCAGCCAGTGGTGGCAGCCTGAGCTGAACTTGCAGTGCAGTAAATATCGGTACTCTGTAGGTGCATGACAT
TGGAAAAAATGTCTTAGGAGACCCTTCTTACACTTTCGTTTATTCATTGTGGTTCGTTCCACTCTATTGTAGCTGTCAAT
ATGCTGTAATAGATGTTTCTTGAACCTCTGATTCTGTTGACATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50836.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis