Browse Element(s) Details


Os.50891.1.S1_at

Description gb:AK059287.1
DB_XREF= gi:32969305
TID=Os.50891.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50891 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-025-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-025-D11, full insert sequence.
FL= gb:AK059287.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0552010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05480Os.12683.1.S1_at11/112+2642979..2646358Mitogen-activated protein kinase homolog NTF3, putative, expressed
LOC_Os02g05490Os.26369.1.S1_at11/112+2656063..2659126expressed protein
LOC_Os02g05500Os.7288.1.S1_at11/112+2659670..2663041Pyridoxamine 5'-phosphate oxidase family protein, expressed
LOC_Os02g05510Os.6390.1.S1_at11/112+2664440..2668159GATA transcription factor 25, putative, expressed
LOC_Os02g05520Os.50891.1.S1_at10/112+2668554..2671019expressed protein
LOC_Os02g05530NANA2+2674124..2676602expressed protein
LOC_Os02g05540OsAffx.11904.1.S1_at11/112+2679974..2680527hypothetical protein
LOC_Os02g05550OsAffx.442.1.S1_x_at5/112+2681212..2685179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g05550OsAffx.30226.2.S1_s_at5/112+2681212..2685179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g05550OsAffx.30226.4.S1_x_at4/112+2681212..2685179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g05550OsAffx.30226.4.S1_at4/112+2681212..2685179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g05550OsAffx.30226.2.S1_x_at3/112+2681212..2685179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g05550OsAffx.30226.1.S1_x_at2/112+2681212..2685179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g05550OsAffx.24587.1.S1_x_at2/112+2681212..2685179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g05550OsAffx.19052.1.S1_at1/112+2681212..2685179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g05550OsAffx.30226.1.S1_at1/112+2681212..2685179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g05550OsAffx.442.1.S1_at1/112+2681212..2685179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g05560NANA2+2695687..2700301retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50891.1.S1_at--987--3391Chr02:2670144..2670168 (25 bp)
CAGCTGCGCTGTTGTTCAGCAAGCA
LOC_Os02g05520
Os.50891.1.S1_at--693--2011Chr02:2670192..2670216 (25 bp)
ACTCAATCTGGAACTGGAAGCTCAT
LOC_Os02g05520
Os.50891.1.S1_at--979--1471Chr02:2670733..2670757 (25 bp)
AGCAAAGGGATTCCATCTCGGTCCA
LOC_Os02g05520
Os.50891.1.S1_at--351--5451Chr02:2670803..2670827 (25 bp)
GAACGAGTCCCTAAAGCGGAGGCTG
LOC_Os02g05520
Os.50891.1.S1_at--551--891Chr02:2670822..2670846 (25 bp)
AGGCTGGCGATCTCTGAACTTGACT
LOC_Os02g05520
Os.50891.1.S1_at--803--1351Chr02:2670854..2670878 (25 bp)
AGAGAATGAACCAATTCCCCTCTTC
LOC_Os02g05520
Os.50891.1.S1_at--1117--8731Chr02:2670898..2670922 (25 bp)
TGTACGTACCACCAAACCATCAGAG
LOC_Os02g05520
Os.50891.1.S1_at--747--1271Chr02:2670934..2670958 (25 bp)
AGATCATTTGGCTGGCTGCAAGTCC
LOC_Os02g05520
Os.50891.1.S1_at--376--4371Chr02:2670958..2670982 (25 bp)
CCACATGTTCACTGGGTTGATCTAG
LOC_Os02g05520
Os.50891.1.S1_at--411--6651Chr02:2670973..2670997 (25 bp)
GTTGATCTAGGACTGCACATTCTTC
LOC_Os02g05520
Os.50891.1.S1_at--410--3011Chr02:2671008..2671032 (25 bp)
AATGCAACCAATTCAGTCACTTATT
NONE
Target Sequence 
CAGCTGCGCTGTTGTTCAGCAAGCAACCAATGAAGCTGTGATAAAGCAACTCAATCTGGAACTGGAAGCTCATAAAGCTC
ACATTGACATGCTAAATAGCAGGTTGGAGCAGGTTACTGCTGATGTGCACCAGCAGTATAAAAACGAGATCCAGGATCTG
AAGGATGTAGTCATTGTTGAACAGGAGGAGAAAAATGACATGCATAGGAAGCTTCAGAATACTGAAAATGAATTGAGGAT
CATGAAGATGAAGCAGGCAGAGCAGCAAAGGGATTCCATCTCGGTCCAGCACGTGGAGACACTGAAGCAGAAGGTGATGA
AGTTCCGGAAGGAGAACGAGTCCCTAAAGCGGAGGCTGGCGATCTCTGAACTTGACTGCTCATGAGAGAATGAACCAATT
CCCCTCTTCCTTTGATGCTCTCACGCACTGTACGTACCACCAAACCATCAGAGGCTAGAAAATTAGATCATTTGGCTGGC
TGCAAGTCCCACATGTTCACTGGGTTGATCTAGGACTGCACATTCTTCAGTTAAAATGAATGCAACCAATTCAGTCACTT
ATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50891.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis