Browse Element(s) Details


Os.50932.1.S1_at

Description gb:AK059537.1
DB_XREF= gi:32969555
TID=Os.50932.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50932 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-029-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-029-E03, full insert sequence.
FL= gb:AK059537.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4894010/11Chloride channel protein CLC-d, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48870OsAffx.13416.1.S1_at11/113+27785552..27786497expressed protein
LOC_Os03g48880OsAffx.25629.1.S1_at11/113+27787590..27789116Leucine Rich Repeat family protein
LOC_Os03g48890OsAffx.8934.1.S1_x_at1/113+27792803..27795078Leucine Rich Repeat family protein
LOC_Os03g48890OsAffx.26563.1.S1_at1/113+27792803..27795078Leucine Rich Repeat family protein
LOC_Os03g48904Os.50733.1.A1_x_at10/113+27796146..27802647expressed protein
LOC_Os03g48904Os.52946.1.S1_at8/113+27796146..27802647expressed protein
LOC_Os03g48904OsAffx.13417.1.S1_x_at6/113+27796146..27802647expressed protein
LOC_Os03g48904Os.52635.1.S2_at1/113+27796146..27802647expressed protein
LOC_Os03g48920Os.27770.1.A1_a_at11/113+27803974..27807677expressed protein
LOC_Os03g48920Os.27770.3.A1_a_at11/113+27803974..27807677expressed protein
LOC_Os03g48930Os.9323.1.S1_at11/113+27807867..27810251Proteasome subunit beta type 2, putative, expressed
LOC_Os03g48930OsAffx.24763.1.S1_at1/113+27807867..27810251Proteasome subunit beta type 2, putative, expressed
LOC_Os03g48940Os.50932.1.S1_at10/113+27810937..27821033Chloride channel protein CLC-d, putative, expressed
LOC_Os03g48950Os.56231.1.S1_at11/113+27827117..27831535expressed protein
LOC_Os03g48960NANA3+27832590..27832952hypothetical protein
LOC_Os03g48970Os.7928.1.S1_at11/113+27839564..27843641CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os03g48980NANA3+27845557..27847083transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006821biological_processchloride transport
GO:0010038biological_processresponse to metal ion
GO:0010167biological_processresponse to nitrate
GO:0005622cellular_componentintracellular
GO:0005247molecular_functionvoltage-gated chloride channel activity
GO:0005253molecular_functionanion channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50932.1.S1_at--872--5191Chr03:27811879..27811903 (25 bp)
GCAATAATGTGACAACTGAGCTCCA
LOC_Os03g48940
Os.50932.1.S1_at--774--1971Chr03:27811865..27811889 (25 bp)
ACTGAGCTCCAGTCGACTAGTGTAA
LOC_Os03g48940
Os.50932.1.S1_at--1062--7691Chr03:27811423..27811447 (25 bp)
GGGTCAGCTGAATGGCAAAATGCTC
LOC_Os03g48940
Os.50932.1.S1_at--809--3011Chr03:27811405..27811429 (25 bp)
AATGCTCAGTGGCAGCACACATCTG
LOC_Os03g48940
Os.50932.1.S1_at--299--2111Chr03:27811339..27811363 (25 bp)
ACATGTGACCATAATCTCTCAAGAT
LOC_Os03g48940
Os.50932.1.S1_at--277--1271Chr03:27811318..27811342 (25 bp)
AGATAATTTTGACCGCAAGCAGCTA
LOC_Os03g48940
Os.50932.1.S1_at--542--10251Chr03:27811311..27811335 (25 bp)
TTTGACCGCAAGCAGCTAACCTGTC
LOC_Os03g48940
Os.50932.1.S1_at--937--1571Chr03:27811298..27811322 (25 bp)
AGCTAACCTGTCACTGCATCCTGGG
LOC_Os03g48940
Os.50932.1.S1_at--1077--7571Chr03:27811275..27811299 (25 bp)
GGGCATGTTTAGCTCCTCGAACAAG
LOC_Os03g48940
Os.50932.1.S1_at--60--4551Chr03:27811247..27811271 (25 bp)
GCCCTGGACTCTGGCTGATGCAACA
LOC_Os03g48940
Os.50932.1.S1_at--504--3511Chr03:27810930..27810954 (25 bp)
CATGAGTTCCTTAAATTGTTGCCCC
NONE
Target Sequence 
GCAATAATGTGACAACTGAGCTCCAGTCGACTAGTGTAAGGGGTCAGCTGAATGGCAAAATGCTCAGTGGCAGCACACAT
CTGGGGCATCCTCTTCTTGATAGTATTGTGGTTGAGGAGTAAATACATGTGACCATAATCTCTCAAGATAATTTTGACCG
CAAGCAGCTAACCTGTCACTGCATCCTGGGGCATGTTTAGCTCCTCGAACAAGGCGGCCCTGGACTCTGGCTGATGCAAC
ATGAATTGGATTCTGCAATCCTATGCGACAGAAAGGGTANCAATGAGCTATCCTCATGTAGTGGCTAATTAGGTGATTTG
CCCCATACCTTGGATACTAGTTAGGTGATTGTAAGTTGTAACTCGTAGAAATGTTTAGATGTTTATACCCATCATCCGTG
CATACCACGAGAAAACATCTGATTATGTTTACACAACGATTTTATAGGATTCATTTTTCTTTACAGGAGTTTGCGCATGT
AAATACCTTTTTTTTTTCTTAACGGGAATTACAGGGAAGCCCCAGACCTGAGGCATGAGTTCCTTAAATTGTTGCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50932.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis