Browse Element(s) Details


Os.5098.1.S1_at

Description gb:AK100369.1
DB_XREF= gi:32985578
TID=Os.5098.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5098 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023084A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023084A05, full insert sequence.
FL= gb:AK100369.1 gb:AK061155.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1790011/11hydrolase, alpha/beta fold family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17850OsAffx.3263.1.S1_at11/113+9925432..9931477Glycosyltransferase family 43 protein, expressed
LOC_Os03g17850Os.22590.1.A1_at11/113+9925432..9931477Glycosyltransferase family 43 protein, expressed
LOC_Os03g17860Os.51769.1.S1_at10/113+9931886..9934167Thioredoxin family protein, expressed
LOC_Os03g17870Os.32714.1.S1_at1/113+9936480..9937064Metallothionein-like protein 1, putative, expressed
LOC_Os03g17880NANA3+9939802..9940071hypothetical protein
LOC_Os03g17890OsAffx.25127.1.S1_at10/113+9944424..9944832hypothetical protein
LOC_Os03g17900Os.5098.1.S1_at11/113+9951546..9956814hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g17900OsAffx.19674.1.S1_at1/113+9951546..9956814hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g17910OsAffx.27508.63.S1_s_at11/113+9957977..9960077kinesin like protein, putative, expressed
LOC_Os03g17920Os.52177.1.S1_at11/113+9960342..9965612pseudouridine synthase family protein, putative, expressed
LOC_Os03g17930Os.13621.1.S1_at11/113+9966269..9969439Alpha-taxilin, putative, expressed
LOC_Os03g17940Os.56999.1.S1_at11/113+9969564..9972358PAP2 superfamily protein, expressed
LOC_Os03g17940Os.25160.1.S1_at1/113+9969564..9972358PAP2 superfamily protein, expressed
LOC_Os03g17950Os.53449.1.A1_at11/113+9973968..9977959expressed protein
LOC_Os03g17960Os.53834.1.S1_at11/113+9978689..9981787expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5098.1.S1_at--265--10831Chr03:9956228..9956252 (25 bp)
TTGGGATTCCTCAGGGCCCTATCAA
LOC_Os03g17900
Os.5098.1.S1_at--1048--1431Chr03:9956262..9956286 (25 bp)
AGAACCCATTGAAGTTGCCTCCGAA
LOC_Os03g17900
Os.5098.1.S1_at--971--491Chr03:9956340..9956364 (25 bp)
ATCGGACTTGGCCTGATAGCATTCA
LOC_Os03g17900
Os.5098.1.S1_at--444--5571Chr03:9956431..9956455 (25 bp)
GAAAGATAGCTTTCGTCGGCTCTCA
LOC_Os03g17900
Os.5098.1.S1_at--852--9671Chr03:9956453..9956477 (25 bp)
TCACCGGCGGACATTGTTGACAGCG
LOC_Os03g17900
Os.5098.1.S1_at--370--4911Chr03:9956492..9956516 (25 bp)
GCTTCTTTTGCGCTAGTATTTGTAT
LOC_Os03g17900
Os.5098.1.S1_at--725--10491Chr03:9956589..9956613 (25 bp)
TTAAAAGTTCTGCACGTCACCTGCT
LOC_Os03g17900
Os.5098.1.S1_at--953--10031Chr03:9956698..9956722 (25 bp)
TAGATACTCCTATGTTCTTCACGCT
LOC_Os03g17900
Os.5098.1.S1_at--661--9551Chr03:9956713..9956737 (25 bp)
TCTTCACGCTGCTATGATGATGGGT
LOC_Os03g17900
Os.5098.1.S1_at--471--711Chr03:9956729..9956753 (25 bp)
ATGATGGGTCACAGCACTCATCTGT
LOC_Os03g17900
Os.5098.1.S1_at--138--5651Chr03:9956759..9956783 (25 bp)
GACAGCCAGTGTTCTTGGTCGCTAA
LOC_Os03g17900
Target Sequence 
TTGGGATTCCTCAGGGCCCTATCAACCCTGTACCAGAACCCATTGAAGTTGCCTCCGAACTCACAGAAGAAACAACAGTA
CCTGACAAAGCTAAAGAAGAGGAGCAGGACATATCGGACTTGGCCTGATAGCATTCAGATTCAGGAAATCAGTATCAGAA
GCAGTATAGACACGAGACGATACTACTTAACACAGACACCACAGAAAGATAGCTTTCGTCGGCTCTCACCGGCGGACATT
GTTGACAGCGGGTGGACCGAGCTGGCTTCTTTTGCGCTAGTATTTGTATAGGCAAATTCTTGAAGAAGGATGCTACGGTG
CGGTTGATGTGCCGGCTCATTTCAATGTACAAAAGGGCTATTTAAAAGTTCTGCACGTCACCTGCTGGGTGCGCTGCTGC
TACTCTGGTAGAGCTCAGTGATAGCTATATAACATTTGATTAAACTTCTTACTACGTTGCATGTNGTTTTTAGATACTCC
TATGTTCTTCACGCTGCTATGATGATGGGTCACAGCACTCATCTGTGCAGGGACAGCCAGTGTTCTTGGTCGCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5098.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis