Browse Element(s) Details


Os.51101.1.S1_at

Description gb:AK060667.1
DB_XREF= gi:32970685
TID=Os.51101.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51101 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-028-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-028-E01, full insert sequence.
FL= gb:AK060667.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4937010/11Glycosyltransferase family 43 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g49320Os.19304.1.S1_at11/117+29532776..29544001HEAT repeat family protein, expressed
LOC_Os07g49330Os.8107.1.S1_at11/117+29544148..29547285phosphoinositide-specific phospholipase C, putative, expressed
LOC_Os07g49340OsAffx.31816.1.S1_at2/117+29551217..29553949transposon protein, putative, Mariner sub-class
LOC_Os07g49350Os.53257.1.S1_at10/117+29554325..29556346expressed protein
LOC_Os07g49360Os.11557.1.S1_at11/117+29559514..29560830Peroxidase 21 precursor, putative, expressed
LOC_Os07g49370Os.51101.1.S1_at10/117+29564377..29570021Glycosyltransferase family 43 protein, expressed
LOC_Os07g49370OsAffx.13115.1.S1_at1/117+29564377..29570021Glycosyltransferase family 43 protein, expressed
LOC_Os07g49380Os.53339.1.S1_a_at11/117+29574894..29577416PWWP domain containing protein, expressed
LOC_Os07g49390OsAffx.16770.1.S1_at11/117+29578160..29581440prephenate dehydratase family protein, expressed
LOC_Os07g49390OsAffx.16770.1.S1_x_at11/117+29578160..29581440prephenate dehydratase family protein, expressed
LOC_Os07g49390Os.52331.1.A1_at8/117+29578160..29581440prephenate dehydratase family protein, expressed
LOC_Os07g49400Os.12693.5.S1_x_at11/117+29582054..29584641L-ascorbate peroxidase 2, cytosolic, putative, expressed
LOC_Os07g49400Os.12693.1.S1_a_at11/117+29582054..29584641L-ascorbate peroxidase 2, cytosolic, putative, expressed
LOC_Os07g49400Os.12693.3.S1_at11/117+29582054..29584641L-ascorbate peroxidase 2, cytosolic, putative, expressed
LOC_Os07g49410Os.52204.1.S1_at11/117+29588250..29592119Uncharacterized ACR, YagE family COG1723 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006486biological_processprotein amino acid glycosylation
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51101.1.S1_at--630--411Chr07:29567354..29567376 (23 bp)
ATCAGGACATTTGGTGCGTGGCCCG
LOC_Os07g49370
Os.51101.1.S1_at--813--2891Chr07:29567303..29567327 (25 bp)
AAGGTGATGGTGCAAGGCCCACTCT
LOC_Os07g49370
Os.51101.1.S1_at--974--9671Chr07:29567251..29567275 (25 bp)
TCACCCGCGGCTGGTTCGATATGGA
LOC_Os07g49370
Os.51101.1.S1_at--362--1611Chr07:29567135..29567159 (25 bp)
AGCTGGATGCTGTGGGACCCGCACA
LOC_Os07g49370
Os.51101.1.S1_at--68--1831NONE
ACGCCTCGCAGGAATCAGTGAAGTT
NONE
Os.51101.1.S1_at--951--6191Chr07:29564605..29564629 (25 bp)
GAGGAATACAACCAGTCGACGACGA
LOC_Os07g49370
Os.51101.1.S1_at--826--2251Chr07:29564553..29564577 (25 bp)
AAATCATGCTCTGGCGCATCCAAAC
LOC_Os07g49370
Os.51101.1.S1_at--124--2392Chr08:2308466..2308830 (25 bp)
AAACTACGCTCTAGGCTCTAGCTAG
NONE
Os.51101.1.S1_at--745--3591Chr07:29564499..29564523 (25 bp)
CATTCTTCTTCCTTAATCATCGATC
LOC_Os07g49370
Os.51101.1.S1_at--1151--391Chr07:29564484..29564508 (25 bp)
ATCATCGATCGTCAATCTCCAAAAC
LOC_Os07g49370
Os.51101.1.S1_at--276--3331Chr07:29564456..29564480 (25 bp)
CACTCCTACTCCTATCTAAGACAAA
LOC_Os07g49370
Target Sequence 
ATCAGGACATTTGGTGCGTGGCCCGTGGCGACAGTGTCGGCGTACGAGCGAAAGGTGATGGTGCAAGGCCCACTCTGCAT
CAACACATCCTCCTCGTCGGTGATCACCCGCGGCTGGTTCGATATGGACATGGACATGGCGGCCGGCGGCGAGCGGCGAG
CGGCCGCTGACCGGCCGCCTCCGGAGACGTTAATGGAAGTGGGCGGGTTCGCGTTCAGCAGCTGGATGCTGTGGGACCCG
CACAGGTGGGACCGCTTCCCCCTCTCCGACCCCGACGCCTCGCAGGAATCAGTGAAGTTCGTGCAGCGGGTGGCGGTGGA
GGAATACAACCAGTCGACGACGAGGGGGATGCCGGACTCCGATTGCTCCCAAATCATGCTCTGGCGCATCCAAACTACGC
TCTAGGCTCTAGCTAGCTTAATTTCATTCTTCTTCCTTAATCATCGATCGTCAATCTCCAAAACCCACACTCCTACTCCT
ATCTAAGACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51101.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis