Browse Element(s) Details


Os.5112.1.S1_at

Description gb:AK102124.1
DB_XREF= gi:32987333
TID=Os.5112.1
CNT=28
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5112 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033084O13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033084O13, full insert sequence.
FL= gb:AK102124.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5781011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57760Os.27395.1.S1_a_at11/114+34181023..34182505expressed protein
LOC_Os04g57760OsAffx.14458.1.S1_x_at11/114+34181023..34182505expressed protein
LOC_Os04g57770Os.12921.1.S1_at11/114+34187874..34189427expressed protein
LOC_Os04g57770OsAffx.4202.1.S1_at11/114+34187874..34189427expressed protein
LOC_Os04g57780OsAffx.26647.1.S1_at10/114+34191367..34194102TPR Domain containing protein, expressed
LOC_Os04g57790Os.49179.1.S1_at11/114+34194379..34196563Ubiquinone biosynthesis protein COQ4 homolog, putative, expressed
LOC_Os04g57800Os.47989.1.S1_at10/114+34196864..34201247NPH3 family protein, expressed
LOC_Os04g57810Os.5112.1.S1_at11/114+34204464..34207169expressed protein
LOC_Os04g57819NANA4+34208924..34209115NA
LOC_Os04g57830Os.50377.1.S1_at9/114+34217596..34219647expressed protein
LOC_Os04g57840Os.52864.1.S1_at11/114+34221269..34225011transposon protein, putative, unclassified, expressed
LOC_Os04g57850Os.54727.1.S1_s_at11/114+34225770..34227752AMP-binding enzyme family protein, expressed
LOC_Os04g57850Os.19444.1.S1_at4/114+34225770..34227752AMP-binding enzyme family protein, expressed
LOC_Os04g57860Os.50125.1.S1_at11/114+34231500..34235279Glycosyl hydrolase family 9 protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5112.1.S1_at--34--7852Chr04:34206480..34206504 (25 bp)
GGTACTTGCCCATACAGAGGTCTAC
LOC_Os04g57810
Os.5112.1.S1_at--534--1331Chr04:34206495..34206519 (25 bp)
AGAGGTCTACCAGCATTCAAGCCAG
LOC_Os04g57810
Os.5112.1.S1_at--986--10671Chr04:34206647..34206671 (25 bp)
TTCCTTGCGGCTGACATGTGATGAT
LOC_Os04g57810
Os.5112.1.S1_at--492--1332Chr04:34206783..34206807 (25 bp)
AGAGGACCATTGCTGTAGTCCCTGC
LOC_Os04g57810
Os.5112.1.S1_at--429--6611Chr04:34206812..34206836 (25 bp)
GATTGGGATCCAGTGCAGTTGCTAG
LOC_Os04g57810
Os.5112.1.S1_at--680--7891Chr04:34206888..34206912 (25 bp)
GGTTCTAGCACCTGTATACTGTAGC
LOC_Os04g57810
Os.5112.1.S1_at--31--4871Chr04:34206991..34207015 (25 bp)
GCTAGTTATCACCACTTTCTGGTTC
LOC_Os04g57810
Os.5112.1.S1_at--389--8571Chr04:34207010..34207034 (25 bp)
TGGTTCCCAGGTTTCAGGTGTGAGT
LOC_Os04g57810
Os.5112.1.S1_at--535--9331Chr04:34207040..34207064 (25 bp)
TCGCCTATGCGTTCTGTTTTGATGA
LOC_Os04g57810
Os.5112.1.S1_at--1106--8732Chr04:34207110..34207134 (25 bp)
TGTCAAATCTCAAATCGCACGTCGC
LOC_Os04g57810
Os.5112.1.S1_at--426--8851Chr04:34207145..34207169 (25 bp)
TGATCTTGCAAGACAGTGACCCCTT
LOC_Os04g57810
Target Sequence 
GGTACTTGCCCATACAGAGGTCTACCAGCATTCAAGCCAGGCGAGAAGATTNCCCTACCTGGCAACTTCCTTGCGGCTGA
CATGTGATGATAGAAGGGAACATCGGCAACAGCAGCAGATAGGAATTGGCTTCTTTAATTTGTTCGTTCGTTAGAATGTT
GAAGTTGCTGACCAAGTATGGGTGTGATAGTAGATGGAAAGAAGAGGACCATTGCTGTAGTCCCTGCTAGGGATTGGGAT
CCAGTGCAGTTGCTAGGGTAACTGCAACTTAAGCAGTTGNACTAGCACCNACATGATAACAAATTAATGGTTCTAGCACC
TGTATACTGTAGCAGAAATTACTGTTTCACGTGTTTTGTAGCAACAAATCTGGACCATTGGATGAAAATACAAATGGATC
TCAATCCCCCNGCTAGTTATCACCACTTTCTGGTTCCCAGGTTTCAGGTGTGAGTGTGACTCGCCTATGCGTTCTGTTTT
GATGATATATGTAANTGAGAAAATACTGCACTGTTGTTTCATTGTGAAACTGTCAAATCTCAAATCGCACGTCGCTGCTN
TCTGCTGATCTTGCAAGACAGTGACCCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5112.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis