Browse Element(s) Details


Os.51128.1.S1_at

Description gb:AK061035.1
DB_XREF= gi:32971053
TID=Os.51128.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51128 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-205-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-205-A09, full insert sequence.
FL= gb:AK061035.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2084410/11Optic atrophy 3 protein containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g20820OsAffx.30389.2.S1_at3/112+12305834..12306536retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g20820OsAffx.28661.1.S1_x_at3/112+12305834..12306536retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g20830OsAffx.10633.1.S1_at7/112+12309921..12312303retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g20840Os.27541.1.A1_at1/112+12312582..12318463retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g20844Os.51128.1.S1_x_at11/112+12320247..12324011Optic atrophy 3 protein containing protein, expressed
LOC_Os02g20844Os.51128.1.S1_at10/112+12320247..12324011Optic atrophy 3 protein containing protein, expressed
LOC_Os02g20850Os.4022.1.S1_at10/112+12324544..12326740RAC-like GTP binding protein RAC13, putative, expressed
LOC_Os02g20860Os.9586.1.S1_at11/112+12335373..12338628ATP11 protein, expressed
LOC_Os02g20870Os.49858.1.S1_at11/112+12339725..12348525RNA helicase, putative, expressed
LOC_Os02g20870Os.38745.2.S1_at2/112+12339725..12348525RNA helicase, putative, expressed
LOC_Os02g20880OsAffx.24948.1.S1_at11/112+12348939..12349757hypothetical protein
LOC_Os02g20880OsAffx.19134.1.S1_at1/112+12348939..12349757hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51128.1.S1_at--361--2371NONE
AAACGAAGTTGAGGCGTTGAGGCAA
NONE
Os.51128.1.S1_at--126--3691Chr02:12323956..12323980 (25 bp)
GCCAAAGTACTTCTGGTTTGTAACT
LOC_Os02g20844
Os.51128.1.S1_at--534--2831Chr02:12323960..12323984 (25 bp)
AAGTACTTCTGGTTTGTAACTCGAT
LOC_Os02g20844
Os.51128.1.S1_at--527--7011Chr02:12323962..12323986 (25 bp)
GTACTTCTGGTTTGTAACTCGATCA
LOC_Os02g20844
Os.51128.1.S1_at--1026--2051Chr02:12323964..12323988 (25 bp)
ACTTCTGGTTTGTAACTCGATCATG
LOC_Os02g20844
Os.51128.1.S1_at--167--9471Chr02:12323967..12323991 (25 bp)
TCTGGTTTGTAACTCGATCATGTTC
LOC_Os02g20844
Os.51128.1.S1_at--1106--7851Chr02:12323970..12323994 (25 bp)
GGTTTGTAACTCGATCATGTTCATA
LOC_Os02g20844
Os.51128.1.S1_at--505--7051Chr02:12323975..12323999 (25 bp)
GTAACTCGATCATGTTCATATCAGT
LOC_Os02g20844
Os.51128.1.S1_at--669--1991Chr02:12323978..12324002 (25 bp)
ACTCGATCATGTTCATATCAGTGTA
LOC_Os02g20844
Os.51128.1.S1_at--1068--6431Chr02:12323982..12324006 (25 bp)
GATCATGTTCATATCAGTGTATTAC
LOC_Os02g20844
Os.51128.1.S1_at--385--8791Chr02:12323987..12324011 (25 bp)
TGTTCATATCAGTGTATTACAAGGT
LOC_Os02g20844
Target Sequence 
AAACGAAGTTGAGGCGTTGAGGCAAAAGGAGGATCAGTTGGCTCGGGAGATAGAGATTGTGAAGCAGAAACTTGGCGAGA
TAGAGCGCCAAGCTAATTCTCGAGGTCTCTCTGGAGTTCTTTTCAGAAGCAGCAGTGCTCCAGACCAAACAAAGGCCTCA
TGAGTTTGATTAACTAGGACAAAGGCAAGACTTCAATGGCAGCATCACAACCAAGTTAATCGATTACTGTCCTGCATTGC
TTGTGATATTGCACATGGATGTGCAGATTTTTGAAGCACACATCTTGTAGCTTGTGTTTTTCCTGCCAATCACCATGGGA
ATGGGCCCATAGCTTGAGGTTTCGAACAACTTGTCGTATTTGAGGCTATTTTAACTCGAAAGCGTTGGAGAGCAGTTCCA
AGAAGGGAACATCTGGCAAGTGCAAAGCAGAATTGTGCTATGTGTGTGTTGTCTGGCAATTCTCGCGAGTTGTCAACTTG
CATCATAAGATAACTGTATGCCATGAACTTGTCAACATGGGAAGCAGATTGCTGCCAAAGTACTTCTGGTTTGTAACTCG
ATCATGTTCATATCAGTGTATTACAAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51128.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis