Browse Element(s) Details


Os.51162.1.S1_at

Description gb:AK070243.1
DB_XREF= gi:32980267
TID=Os.51162.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51162 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023047G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023047G07, full insert sequence.
FL= gb:AK070243.1 gb:AK061238.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4456011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44540Os.54660.1.S1_at11/113+25023300..25028891CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os03g44540OsAffx.31294.1.S1_x_at2/113+25023300..25028891CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os03g44540OsAffx.31294.1.S1_at1/113+25023300..25028891CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os03g44544NANA3+25028842..25030099hypothetical protein
LOC_Os03g44550OsAffx.18103.1.S1_x_at1/113+25035772..25037309retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g44550OsAffx.20848.1.S1_x_at1/113+25035772..25037309retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g44550OsAffx.20848.1.S1_at1/113+25035772..25037309retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g44550OsAffx.19857.1.S1_at1/113+25035772..25037309retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g44550OsAffx.15708.1.S1_at1/113+25035772..25037309retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g44560Os.51162.1.S1_at11/113+25047207..25051073expressed protein
LOC_Os03g44560OsAffx.13345.1.S1_at10/113+25047207..25051073expressed protein
LOC_Os03g44580Os.18246.1.S1_at11/113+25056028..25058800expressed protein
LOC_Os03g44590NANA3+25061381..25064807transposon protein, putative, Mutator sub-class
LOC_Os03g44600OsAffx.27271.1.S1_at11/113+25065210..25065793hypothetical protein
LOC_Os03g44610Os.9033.1.S1_at10/113+25070355..25078460IQ calmodulin-binding motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51162.1.S1_at--874--6731Chr03:25047541..25047565 (25 bp)
GTTCTTCTAGGCTTTTGGTGCACCC
LOC_Os03g44560
Os.51162.1.S1_at--176--6651Chr03:25047516..25047540 (25 bp)
GTTGTTCATACTCTTCTGCCACTAT
LOC_Os03g44560
Os.51162.1.S1_at--1080--8851Chr03:25047472..25047496 (25 bp)
TGATGCTGTACCTATTGCTCGTTAG
LOC_Os03g44560
Os.51162.1.S1_at--1068--1011Chr03:25047449..25047473 (25 bp)
AGGTTTGCCCGATCTGATTTTAGCT
LOC_Os03g44560
Os.51162.1.S1_at--289--10591Chr03:25047409..25047433 (25 bp)
TTCTGCGTCATTTTCCACTAGTATT
LOC_Os03g44560
Os.51162.1.S1_at--490--9171Chr03:25047396..25047420 (25 bp)
TCCACTAGTATTCTTTCCATTCCAG
LOC_Os03g44560
Os.51162.1.S1_at--429--51Chr03:25047378..25047402 (25 bp)
ATTCCAGTTCCCACTTAACTTCAAT
LOC_Os03g44560
Os.51162.1.S1_at--339--5571Chr03:25047314..25047338 (25 bp)
GAAAGGTCCTTGTCCGGTTTGCGCG
LOC_Os03g44560
Os.51162.1.S1_at--177--1551Chr03:25047251..25047275 (25 bp)
AGCTTTCATCTATGTACCAGTCGCC
LOC_Os03g44560
Os.51162.1.S1_at--125--1731Chr03:25047236..25047260 (25 bp)
ACCAGTCGCCACATGTTTCAGAAAT
LOC_Os03g44560
Os.51162.1.S1_at--549--5591Chr03:25047216..25047240 (25 bp)
GAAATTGCTGTCTATGATCATCGGA
LOC_Os03g44560
Target Sequence 
GTTCTTCTAGGCTTTTGGTGCACCCGTTGTTCATACTCTTCTGCCACTATTTCTCTGGAGCTCCCTGCCTGATGCTGTAC
CTATTGCTCGTTAGGTTTGCCCGATCTGATTTTAGCTTGTGTGGAGATGCTCTTCTGCGTCATTTTCCACTAGTATTCTT
TCCATTCCAGTTCCCACTTAACTTCAATTATCTGATGGGTTGCTATATGTTAATGTCATGTACGCAAGAAAGGTCCTTGT
CCGGTTTGCGCGTTTGTAAAAAAACTTCTGGAGTGAATCATGATATTAACAGCTTTCATCTATGTACCAGTCGCCACATG
TTTCAGAAATTGCTGTCTATGATCATCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51162.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis