Browse Element(s) Details


Os.51283.1.S1_at

Description gb:AK062423.1
DB_XREF= gi:32972441
TID=Os.51283.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51283 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-102-G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-102-G10, full insert sequence.
FL= gb:AK062423.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g142506/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g14210Os.52765.1.S1_at4/114+7949490..7951366hypothetical protein
LOC_Os04g14220Os.27666.1.A1_at11/114+7952923..7963717NB-ARC domain containing protein, expressed
LOC_Os04g14220Os.52537.1.S1_at11/114+7952923..7963717NB-ARC domain containing protein, expressed
LOC_Os04g14220OsAffx.19019.1.S1_at1/114+7952923..7963717NB-ARC domain containing protein, expressed
LOC_Os04g14240OsAffx.26029.1.S1_at11/114+7964246..7965016hypothetical protein
LOC_Os04g14250OsAffx.26030.1.S1_at11/114+7965488..7969649hypothetical protein
LOC_Os04g14250Os.51283.1.S1_at6/114+7965488..7969649hypothetical protein
LOC_Os04g14250OsAffx.10309.1.S1_x_at1/114+7965488..7969649hypothetical protein
LOC_Os04g14260OsAffx.25936.7.S1_s_at11/114+7970583..7973140transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g14260OsAffx.25936.1.S1_s_at11/114+7970583..7973140transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g14260OsAffx.25936.2.S1_x_at3/114+7970583..7973140transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g14260OsAffx.25936.5.S1_x_at2/114+7970583..7973140transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g14270NANA4+7976000..7976638hypothetical protein
LOC_Os04g14280Os.10827.1.S1_x_at8/114+7977228..7980054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g14280Os.46055.2.S1_x_at5/114+7977228..7980054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g14290OsAffx.13815.1.S1_at9/114+7986306..7987295hypothetical protein
LOC_Os04g14304Os.50770.1.S1_at11/114+7988860..7998379Calcium binding EGF domain containing protein, expressed
LOC_Os04g14304OsAffx.12953.1.S1_at1/114+7988860..7998379Calcium binding EGF domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51283.1.S1_at--481--4591Chr04:7968455..7968479 (25 bp)
GCGCACAGCTGTTCATACGACTATA
LOC_Os04g14250
Os.51283.1.S1_at--2--9951Chr04:7968470..7968494 (25 bp)
TACGACTATACGAAGCCCTGTCTAG
LOC_Os04g14250
Os.51283.1.S1_at--416--8731Chr04:7968488..7968512 (25 bp)
TGTCTAGCTAAAAGTCTCCTCGGTC
LOC_Os04g14250
Os.51283.1.S1_at--618--8411Chr04:7968547..7968571 (25 bp)
GGCCCTTTCGATCTGGTTATCAATC
LOC_Os04g14250
Os.51283.1.S1_at--1136--10411Chr04:7968563..7968587 (25 bp)
TTATCAATCGATCCGGTCGCCATGA
LOC_Os04g14250
Os.51283.1.S1_at--601--5811Chr04:7968585..7968820 (25 bp)
TGAACGACGGTCAAGGGTACTTTGC
LOC_Os04g14250
Os.51283.1.S1_at--192--2471NONE
AACACCTGGCGATCTATTTAATATA
NONE
Os.51283.1.S1_at--925--7072Chr04:7980008..7980032 (25 bp)
GTAATTACCGGCACATGATGTTCAA
NONE
Os.51283.1.S1_at--595--3291Chr04:7980030..7980054 (25 bp)
CAAAGAGCAGCTTTTCTATTTCCAT
NONE
Os.51283.1.S1_at--855--3552Chr04:7980052..7980076 (25 bp)
CATCACTGTTATTTTGGCTGCAAGA
NONE
Os.51283.1.S1_at--690--311Chr04:7980116..7980140 (25 bp)
ATACCGTGTGGCCACTTGAACCAAG
NONE
Target Sequence 
GCGCACAGCTGTTCATACGACTATACGAAGCCCTGTCTAGCTAAAAGTCTCCTCGGTCTCGATCCTCACCTTGCCCCTGC
AGCTGCATACCCGGCCCTTTCGATCTGGTTATCAATCGATCCGGTCGCCATGAACGACGGTCAAGGGTACTTTGCTGGCA
AACCAGCGAAACCCAACGACAAAGAACAACAGGCCGGTGATGAGGAGACGCAAGCTGTTGATGCACAAACACCTGGCGAT
CTATTTAATATATACGTACGAAAAATAATGATATATTTGTAATTACCGGCACATGATGTTCAAAGAGCAGCTTTTCTATT
TCCATCACTGTTATTTTGGCTGCAAGAAGCAAGATCATGTTATCGGTCAAATTTGTGTACGCAAATATACCGTGTGGCCA
CTTGAACCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51283.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis