Browse Element(s) Details


Os.51330.1.S1_at

Description gb:AK062554.1
DB_XREF= gi:32972572
TID=Os.51330.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51330 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-104-H06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-104-H06, full insert sequence.
FL= gb:AK062554.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4753011/11Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os01g663501/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g47480Os.55121.1.S1_at10/115+27117833..27119322Transcription factor TFIIB repeat family protein, expressed
LOC_Os05g47490Os.47886.1.S1_at11/115+27120348..27126986multidrug resistance protein 1 homolog, putative, expressed
LOC_Os05g47500OsAffx.15135.1.S1_at11/115+27128642..27134296multidrug resistance protein 1 homolog, putative, expressed
LOC_Os05g47510OsAffx.27351.1.S1_at11/115+27135744..27137066hypothetical protein
LOC_Os05g47520OsAffx.15136.1.S1_at11/115+27139430..27140372hypothetical protein
LOC_Os05g47530Os.51330.1.S1_at11/115+27141585..27143907Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os05g47530OsAffx.27352.1.S1_at9/115+27141585..27143907Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os05g47540Os.17921.1.S1_at11/115+27146140..27150431Phosphoethanolamine N-methyltransferase, putative, expressed
LOC_Os05g47550Os.8798.1.S1_at11/115+27153385..27160178Clathrin assembly protein, putative, expressed
LOC_Os05g47560Os.38365.1.S1_a_at11/115+27162057..27166164Serine/threonine-protein kinase SNT7, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009941cellular_componentchloroplast envelope
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51330.1.S1_at--352--7491Chr05:27142636..27142660 (25 bp)
GTGGAATTTTCCTGTCAAGACACCT
LOC_Os05g47530
Os.51330.1.S1_at--948--5631Chr05:27142618..27142642 (25 bp)
GACACCTAGCTGAAAGAACCATCTG
LOC_Os05g47530
Os.51330.1.S1_at--590--9691Chr05:27142556..27142580 (25 bp)
TCAAAATTTTAAGAGCTGCTGCATT
LOC_Os05g47530
Os.51330.1.S1_at--77--5911Chr05:27142544..27142568 (25 bp)
GAGCTGCTGCATTTGCAAGATCTGT
LOC_Os05g47530
Os.51330.1.S1_at--768--5171Chr05:27142530..27142554 (25 bp)
GCAAGATCTGTACTTGTTAGTGTAC
LOC_Os05g47530
Os.51330.1.S1_at--648--6871Chr05:27142516..27142540 (25 bp)
TGTTAGTGTACTTTAAATGGTCCTT
LOC_Os05g47530
Os.51330.1.S1_at--290--4851Chr05:27142483..27142507 (25 bp)
GCTACAACTATGCTGGAACTCTGAA
LOC_Os05g47530
Os.51330.1.S1_at--753--5191Chr05:27142468..27142492 (25 bp)
GAACTCTGAATATCTCCCTTACAAA
LOC_Os05g47530
Os.51330.1.S1_at--728--6471Chr05:27142396..27142420 (25 bp)
GATAGCTATAGGTACATTCATACAC
LOC_Os05g47530
Os.51330.1.S1_at--1100--9851Chr05:27142376..27142400 (25 bp)
TACACATGTTAGTTCTTCTTAGAGA
LOC_Os05g47530
Os.51330.1.S1_at--1142--6532Chr01:38863848..38864014 (25 bp)
GATTATATTTTCTTCTTACAGGTAA
LOC_Os01g66350
Target Sequence 
GTGGAATTTTCCTGTCAAGACACCTAGCTGAAAGAACCATCTGTTTAATATTCATATTTGAAGTTTTTGATACCAAAATA
TCAAAATTTTAAGAGCTGCTGCATTTGCAAGATCTGTACTTGTTAGTGTACTTTAAATGGTCCTTTTTTAATAGCTACAA
CTATGCTGGAACTCTGAATATCTCCCTTACAAATTAAGTTCTTTTTTTTCCTCAAACACATTTTTTTTCTTTTTCAAAAT
GATAGCTATAGGTACATTCATACACATGTTAGTTCTTCTTAGAGAAGGTTTCTAAGATTATATTTTCTTCTTACAGGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51330.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis