Browse Element(s) Details


Os.51380.1.S1_at

Description gb:AK062678.1
DB_XREF= gi:32972696
TID=Os.51380.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51380 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-105-H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-105-H02, full insert sequence.
FL= gb:AK062678.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1935011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g19304Os.6172.1.S1_s_at11/1112+11191274..11201686expressed protein
LOC_Os12g19304Os.49580.1.S1_at11/1112+11191274..11201686expressed protein
LOC_Os12g19304Os.49580.1.S2_x_at8/1112+11191274..11201686expressed protein
LOC_Os12g19304OsAffx.19746.1.S1_at6/1112+11191274..11201686expressed protein
LOC_Os12g19304Os.49580.1.S2_at5/1112+11191274..11201686expressed protein
LOC_Os12g19320OsAffx.31808.1.S1_at11/1112+11202976..11203356hypothetical protein
LOC_Os12g19330OsAffx.7639.1.S1_at11/1112+11205904..11206516hypothetical protein
LOC_Os12g19350OsAffx.31809.1.S1_at11/1112+11215979..11230320expressed protein
LOC_Os12g19350Os.13552.1.S1_at11/1112+11215979..11230320expressed protein
LOC_Os12g19350Os.51380.1.S1_at11/1112+11215979..11230320expressed protein
LOC_Os12g19350Os.53379.1.S1_at1/1112+11215979..11230320expressed protein
LOC_Os12g19370OsAffx.31810.1.S1_at11/1112+11239907..11257732DNA polymerase I family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51380.1.S1_at--459--6331Chr12:11229799..11229823 (25 bp)
GATGCGTTTCTTATCCAGTAGCTGG
LOC_Os12g19350
Os.51380.1.S1_at--254--3911Chr12:11229778..11229802 (25 bp)
CTGGATGTTCAGTTTTGGACGGTTT
LOC_Os12g19350
Os.51380.1.S1_at--217--9991Chr12:11229742..11229766 (25 bp)
TAGCTGCTTGCTACCTCGAATTAGG
LOC_Os12g19350
Os.51380.1.S1_at--1152--5671Chr12:11229687..11229711 (25 bp)
GACTTGTTTTGTTGGTTTGTGCGAT
LOC_Os12g19350
Os.51380.1.S1_at--134--2771Chr12:11229629..11229653 (25 bp)
AAGACTGATAGCTTGCTCGAGCACA
LOC_Os12g19350
Os.51380.1.S1_at--3--4811Chr12:11229615..11229639 (25 bp)
GCTCGAGCACAACCATTAGGATTGA
LOC_Os12g19350
Os.51380.1.S1_at--454--8371Chr12:11229573..11229597 (25 bp)
GGCGTGCATGACTGCTGTTGTCTCC
LOC_Os12g19350
Os.51380.1.S1_at--553--7171Chr12:11229554..11229578 (25 bp)
GTCTCCACTCTAGGATCGCTGGAAA
LOC_Os12g19350
Os.51380.1.S1_at--320--5571Chr12:11229533..11229557 (25 bp)
GAAAGAGGCCTTTTGGCCCTCTATT
LOC_Os12g19350
Os.51380.1.S1_at--482--2391Chr12:11229489..11229513 (25 bp)
AAACTCTGATCTGTTGTCCTTTTCT
LOC_Os12g19350
Os.51380.1.S1_at--91--6291Chr12:11229375..11229399 (25 bp)
GATGTTTTCTTTTCCAGACGTTCGA
LOC_Os12g19350
Target Sequence 
GATGCGTTTCTTATCCAGTAGCTGGATGTTCAGTTTTGGACGGTTTAGATGGATTTCTAGCTGCTTGCTACCTCGAATTA
GGTGGATTGGGAGGCGGTGCTACGGGGGTTTTGACTTGTTTTGTTGGTTTGTGCGATATGCTAGTAGTTGGCTAGGATGT
GTTTAGCTGCAAGACTGATAGCTTGCTCGAGCACAACCATTAGGATTGATTGTGCGGGGTGGATGGGGCGTGCATGACTG
CTGTTGTCTCCACTCTAGGATCGCTGGAAAGAGGCCTTTTGGCCCTCTATTAAAAAAAAAAACAGAACTGAAACTCTGAT
CTGTTGTCCTTTTCTTGATTGTGCTTGCTTGTTTGGTTAAAGTTTCAGGGTGTATGAATCTCATGCATGTGTCAAACATA
CAAATCTTCCTATGAAAAAGAGTAGATGTTTTCTTTTCCAGACGTTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51380.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis