Browse Element(s) Details


Os.51383.1.S1_at

Description gb:AK105814.1
DB_XREF= gi:32991023
TID=Os.51383.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.51383 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-203-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-203-C08, full insert sequence.
FL= gb:AK062681.1 gb:AK105814.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4091011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40830Os.55100.1.S1_at11/117+24465011..24465690expressed protein
LOC_Os07g40830OsAffx.14586.1.S1_s_at1/117+24465011..24465690expressed protein
LOC_Os07g40840OsAffx.16662.1.S1_at11/117+24467050..24467383hypothetical protein
LOC_Os07g40850Os.11225.1.S1_at11/117+24468413..24469419expressed protein
LOC_Os07g40860Os.13996.1.S1_at11/117+24470742..24471884expressed protein
LOC_Os07g40870Os.52211.1.S1_at11/117+24475685..24476458expressed protein
LOC_Os07g40880OsAffx.16663.1.S1_s_at8/117+24477650..24479221hypothetical protein
LOC_Os07g40880OsAffx.16663.1.S1_x_at4/117+24477650..24479221hypothetical protein
LOC_Os07g40890Os.6669.1.S1_at11/117+24479558..24480255expressed protein
LOC_Os07g40900Os.49602.1.A1_at11/117+24481792..24483225retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os07g40910Os.51383.1.S1_at11/117+24486126..24486754expressed protein
LOC_Os07g40920OsAffx.28849.1.S1_at11/117+24489281..24490537APO protein 3, mitochondrial precursor, putative, expressed
LOC_Os07g40930Os.17414.1.S1_at11/117+24492068..24495865WD-repeat protein 12, putative, expressed
LOC_Os07g40940Os.46187.1.S1_at11/117+24503471..24506958expressed protein
LOC_Os07g40950OsAffx.16664.1.S1_at11/117+24511041..24512024Zinc finger, C2H2 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51383.1.S1_at--720--5491Chr07:24486684..24486708 (25 bp)
GAACAGTACTGATCAGTGCGTGCAA
LOC_Os07g40910
Os.51383.1.S1_at--124--7351Chr07:24486665..24486689 (25 bp)
GTGCAAATAACGACATGGCTTCCAA
LOC_Os07g40910
Os.51383.1.S1_at--542--2791Chr07:24486524..24486548 (25 bp)
AAGATCAGGAGGAGCCGAACCACCC
LOC_Os07g40910
Os.51383.1.S1_at--714--2651Chr07:24486318..24486342 (25 bp)
AAGCCATGATCGATCACGATTAATT
LOC_Os07g40910
Os.51383.1.S1_at--38--4011Chr07:24486292..24486316 (25 bp)
CGTGCAATTAATTAATCCGGTGTGA
LOC_Os07g40910
Os.51383.1.S1_at--408--231Chr07:24486248..24486272 (25 bp)
ATATTTGAACTGTTGCCGGTGAGCA
LOC_Os07g40910
Os.51383.1.S1_at--292--4991Chr07:24486226..24486250 (25 bp)
GCATGCGGGCTCGATCTTGTGGATA
LOC_Os07g40910
Os.51383.1.S1_at--238--7511Chr07:24486208..24486232 (25 bp)
GTGGATAGTTAATTTTCAGCATGGA
LOC_Os07g40910
Os.51383.1.S1_at--45--2571Chr07:24486174..24486198 (25 bp)
AACTGGGTGTGCGAGTTCGATCGAT
LOC_Os07g40910
Os.51383.1.S1_at--899--4611Chr07:24486164..24486188 (25 bp)
GCGAGTTCGATCGATGTCGTTGTTT
LOC_Os07g40910
Os.51383.1.S1_at--47--7211Chr07:24486149..24486173 (25 bp)
GTCGTTGTTTTGAGTCGTTGTGTGT
LOC_Os07g40910
Target Sequence 
GAACAGTACTGATCAGTGCGTGCAAATAACGACATGGCTTCCAAGATCGCCATCTCCCTCCTGCTCGCGGCGCTGCTGGC
GTGCGCCGCCGCGAGCGGCGCGGCGGCGAGGAGGCTGGAGGAGGAGGAGCCGTCGTCGACGACGGCTCCGGCCGAGGAGG
AAGATCAGGAGGAGCCGAACCACCCGGCCGCCGTCTTCCCGGAGCTGCCGGTGCCGGAGCACGAGCTGCCGCCGCTGCCC
AAGGTGGTGGAGCTGCCTCCGTTCTTCCCGGAGGCTCACCTTCCGCCGTTCCCGGAGGTCGACCTGCCGCCCAAGCCGGA
GTTCCCCGGCGTCCCCGAGTTCCACTTCCCGGCCGAGCCAGAGGCCAAGCCATGATCGATCACGATTAATTACGTGCAAT
TAATTAATCCGGTGTGAAGTAGATCGAGTAGAGGGTATATTTGAACTGTTGCCGGTGAGCATGCGGGCTCGATCTTGTGG
ATAGTTAATTTTCAGCATGGATGTGAGTGTAACTGGGTGTGCGAGTTCGATCGATGTCGTTGTTTTGAGTCGTTGTGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51383.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis