Browse Element(s) Details


Os.51420.1.S1_at

Description gb:AK062761.1
DB_XREF= gi:32972779
TID=Os.51420.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51420 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-106-H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-106-H01, full insert sequence.
FL= gb:AK062761.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5525011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55220Os.51422.1.S1_at6/114+32607699..32612052CLB1, putative, expressed
LOC_Os04g55230Os.7692.1.S2_at11/114+32616110..32629411Ataxin-2 C-terminal region family protein, expressed
LOC_Os04g55230Os.7692.1.S1_at10/114+32616110..32629411Ataxin-2 C-terminal region family protein, expressed
LOC_Os04g55240Os.52439.1.S1_at11/114+32633073..32634031VQ motif family protein, expressed
LOC_Os04g55250Os.51420.1.S1_at11/114+32636588..32637580expressed protein
LOC_Os04g55260Os.20407.1.S1_at10/114+32637521..32641208expressed protein
LOC_Os04g55270OsAffx.4183.1.S1_at10/114+32644603..32645667hypothetical protein
LOC_Os04g55280NANA4+32645881..32648257hypothetical protein
LOC_Os04g55290Os.3537.1.S1_at11/114+32649048..32652552G10 protein homolog, putative, expressed
LOC_Os04g55290OsAffx.16132.1.S1_at1/114+32649048..32652552G10 protein homolog, putative, expressed
LOC_Os04g55300OsAffx.26611.2.S1_at9/114+32652874..32655325hypothetical protein
LOC_Os04g55300OsAffx.26611.1.S1_x_at8/114+32652874..32655325hypothetical protein
LOC_Os04g55300OsAffx.32209.1.A1_at5/114+32652874..32655325hypothetical protein
LOC_Os04g55300OsAffx.32283.1.S1_at1/114+32652874..32655325hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51420.1.S1_at--1018--9071Chr04:32637040..32637064 (25 bp)
TGCTCATGTCCGACGTGTTCTACGA
LOC_Os04g55250
Os.51420.1.S1_at--972--4091Chr04:32637173..32637197 (25 bp)
CGACGGCGTGCAGGACTGTATCGAC
LOC_Os04g55250
Os.51420.1.S1_at--381--1971Chr04:32637187..32637211 (25 bp)
ACTGTATCGACGTGCTGCGAGAGCA
LOC_Os04g55250
Os.51420.1.S1_at--609--6951Chr04:32637231..32637255 (25 bp)
GTAGACAGGGTCACTAGGCCGCTGC
LOC_Os04g55250
Os.51420.1.S1_at--1109--7111Chr04:32637288..32637312 (25 bp)
GTCTATCGTCTTTTTCGCCGGACAA
LOC_Os04g55250
Os.51420.1.S1_at--392--511Chr04:32637324..32637348 (25 bp)
ATCGTCTCCAATCCAACGCCGATAA
LOC_Os04g55250
Os.51420.1.S1_at--341--4491Chr04:32637341..32637365 (25 bp)
GCCGATAACTACAGCCGGGTGTTGA
LOC_Os04g55250
Os.51420.1.S1_at--161--3971Chr04:32637356..32637380 (25 bp)
CGGGTGTTGACTTTCACTCTGTAAC
LOC_Os04g55250
Os.51420.1.S1_at--619--7051Chr04:32637396..32637420 (25 bp)
GTAACGGCACCAGAATCACCTTTGA
LOC_Os04g55250
Os.51420.1.S1_at--316--8431Chr04:32637438..32637462 (25 bp)
GGCCATTTTGTACGTACTTTCTTCT
LOC_Os04g55250
Os.51420.1.S1_at--258--10551Chr04:32637456..32637480 (25 bp)
TTCTTCTCGGTTGCAGGACTTGTAA
LOC_Os04g55250
Target Sequence 
TGCTCATGTCCGACGTGTTCTACGACCCGGACGACATGCCGGCGATGGCGGACACGCTGCATGGGCTATGGCGAGACGGC
GACAGCGACAGCGACGGCGGCGGCACGGTGGGGTGGGCGGCGAGCGAGGCGCGCGACGGCGTGCAGGACTGTATCGACGT
GCTGCGAGAGCAAGGCTTCGAGGTGGTCGAGGTAGACAGGGTCACTAGGCCGCTGCTGCGCGACCCCGAGCAGGCCGCCG
ACTTCGCCGTCTATCGTCTTTTTCGCCGGACAACTTCGCCGTCCATCGTCTCCAATCCAACGCCGATAACTACAGCCGGG
TGTTGACTTTCACTCTGTAACAGTAAAGCCAAGCTTGTAACGGCACCAGAATCACCTTTGACCTTTTATTTTCCAAAAGG
CCATTTTGTACGTACTTTCTTCTCGGTTGCAGGACTTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51420.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis