Browse Element(s) Details


Os.51451.1.S1_at

Description gb:AK062832.1
DB_XREF= gi:32972850
TID=Os.51451.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51451 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-107-G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-G08, full insert sequence.
FL= gb:AK062832.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4134011/11B12D protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41280Os.6393.1.S1_at11/117+24735233..247404976-phosphogluconolactonase family protein, expressed
LOC_Os07g41290OsAffx.16671.1.S1_at11/117+24742760..24743414expressed protein
LOC_Os07g41300Os.26596.1.S1_s_at11/117+24745452..24746620Respiratory-chain NADH dehydrogenase, 49 Kd subunit family protein
LOC_Os07g41300OsAffx.32241.1.S1_x_at7/117+24745452..24746620Respiratory-chain NADH dehydrogenase, 49 Kd subunit family protein
LOC_Os07g41310Os.9592.1.S1_at11/117+24750092..24753702COBRA-like protein 2 precursor, putative, expressed
LOC_Os07g41320OsAffx.28857.1.S1_at10/117+24753756..24756457Phytochelatin synthetase-like conserved region family protein, expressed
LOC_Os07g41330Os.11994.1.S1_s_at11/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41330OsAffx.5591.1.S1_at11/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41330Os.11994.1.S1_at10/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41330Os.33305.1.S1_at4/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41330OsAffx.27250.3.S1_x_at1/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41330OsAffx.27250.1.S1_x_at1/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41340Os.51451.1.S1_at11/117+24763984..24765018B12D protein, expressed
LOC_Os07g41340OsAffx.5592.1.S1_at1/117+24763984..24765018B12D protein, expressed
LOC_Os07g41350OsAffx.16673.1.S1_s_at11/117+24766403..24767370B12D protein, expressed
LOC_Os07g41360Os.5451.1.S1_at11/117+24771581..24774831Alpha-1,4-glucan-protein synthase, putative, expressed
LOC_Os07g41360Os.55265.1.S1_at1/117+24771581..24774831Alpha-1,4-glucan-protein synthase, putative, expressed
LOC_Os07g41370Os.4573.1.S1_at10/117+24786781..24791984MADS-box transcription factor 18, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010150biological_processleaf senescence
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51451.1.S1_at--302--9991Chr07:24764020..24764044 (25 bp)
TAGCCGGTCGAGATCAGTTTCAGTT
LOC_Os07g41340
Os.51451.1.S1_at--297--1211Chr07:24764035..24764059 (25 bp)
AGTTTCAGTTTCAGGCTTAGCTAGC
LOC_Os07g41340
Os.51451.1.S1_at--782--9631Chr07:24764045..24764069 (25 bp)
TCAGGCTTAGCTAGCACAGCAACAG
LOC_Os07g41340
Os.51451.1.S1_at--743--5071Chr07:24764069..24764093 (25 bp)
GCAGCGTCGATCGATATGGGCCGTT
LOC_Os07g41340
Os.51451.1.S1_at--538--9391Chr07:24764079..24764103 (25 bp)
TCGATATGGGCCGTTGGTTGAAGCC
LOC_Os07g41340
Os.51451.1.S1_at--87--551Chr07:24764805..24764829 (25 bp)
ATCGCCACGACTGATCAATCGACGA
LOC_Os07g41340
Os.51451.1.S1_at--521--6291Chr07:24764846..24764870 (25 bp)
GATGATCTCGATCACCTACGTGTTG
LOC_Os07g41340
Os.51451.1.S1_at--389--391Chr07:24764856..24764880 (25 bp)
ATCACCTACGTGTTGGCTAATCAAT
LOC_Os07g41340
Os.51451.1.S1_at--14--8491Chr07:24764869..24764893 (25 bp)
TGGCTAATCAATGTATCCACCAATT
LOC_Os07g41340
Os.51451.1.S1_at--153--6931Chr07:24764929..24764953 (25 bp)
GTATGTGCGTGTGTATCTTATCTTC
LOC_Os07g41340
Os.51451.1.S1_at--22--451Chr07:24764943..24764967 (25 bp)
ATCTTATCTTCTTTTATGTAATCGG
LOC_Os07g41340
Target Sequence 
TAGCCGGTCGAGATCAGTTTCAGTTTCAGGCTTAGCTAGCACAGCAACAGCAGCGTCGATCGATATGGGCCGTTGGTTGA
AGCCAGATGTTTACCCGCTGATCGCCGCCATGACCTTCGTCACGGGGCTGTGCACCTTCCAGCTCACAAGGAACGTGTTC
ATGAACCCGGACGTCAGGGTGAACAAGAACAACCGTAAAAGTGCGGTGCTGGAGAACGCGGAGGAGGGTGAGAAGTACCA
CCAGCACGCGTTCCGGCGATTCCTCGCCACGCAGCGGCCGGAGGTCTTCCCGGCGCTCAACCGCTTCTTCGCCGGCCCGG
CGACGGTGGCGAGAAGTGATCGCCACGACTGATCAATCGACGACGACGAAGACGAAGACGATGATCTCGATCACCTACGT
GTTGGCTAATCAATGTATCCACCAATTGTAAGAGTATGGTGTACGAGTACGTGTGTAGTAGTGTATGTGCGTGTGTATCT
TATCTTCTTTTATGTAATCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51451.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis