Browse Element(s) Details


Os.51561.1.S1_x_at

Description gb:AK063071.1
DB_XREF= gi:32973089
TID=Os.51561.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51561 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-110-H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-110-H02, full insert sequence.
FL= gb:AK063071.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g175706/11GDSL-motif lipase/hydrolase, putative
LOC_Os05g347001/11GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os01g527701/11GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g544701/11GDSL-like Lipase/Acylhydrolase family protein
LOC_Os05g442001/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g17530Os.49192.1.S1_at11/1112+10046741..10050428expressed protein
LOC_Os12g17540OsAffx.19718.1.S1_at11/1112+10050822..10052611Vignain precursor, putative
LOC_Os12g17550OsAffx.7619.1.S1_at11/1112+10056128..10065032Leucine Rich Repeat family protein, expressed
LOC_Os12g17550OsAffx.28164.2.S1_at1/1112+10056128..10065032Leucine Rich Repeat family protein, expressed
LOC_Os12g17560NANA12+10066226..10066525hypothetical protein
LOC_Os12g17570OsAffx.31781.1.S1_x_at11/1112+10067571..10069441GDSL-motif lipase/hydrolase, putative
LOC_Os12g17570Os.51561.1.S1_x_at6/1112+10067571..10069441GDSL-motif lipase/hydrolase, putative
LOC_Os12g17570Os.28229.2.S1_x_at1/1112+10067571..10069441GDSL-motif lipase/hydrolase, putative
LOC_Os12g17580OsAffx.17234.1.S1_at1/1112+10072714..10073298transposon protein, putative, unclassified
LOC_Os12g17590OsAffx.31782.1.S1_at10/1112+10075714..10077504expressed protein
LOC_Os12g17600Os.12594.1.S1_x_at9/1112+10077831..10079028Ribulose bisphosphate carboxylase small chain C, chloroplast precursor, putative, expressed
LOC_Os12g17600Os.39363.1.A1_x_at2/1112+10077831..10079028Ribulose bisphosphate carboxylase small chain C, chloroplast precursor, putative, expressed
LOC_Os12g17600Os.28218.1.S1_x_at1/1112+10077831..10079028Ribulose bisphosphate carboxylase small chain C, chloroplast precursor, putative, expressed
LOC_Os12g17610OsAffx.7621.1.S1_at11/1112+10082760..10083598hypothetical protein
LOC_Os12g17620Os.53142.1.S1_at3/1112+10085505..10090947retrotransposon protein, putative, unclassified
LOC_Os12g17620Os.23706.1.A1_x_at1/1112+10085505..10090947retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51561.1.S1_x_at--302--7951Chr12:10069104..10069128 (25 bp)
GGATCAGGCCCGAGACCGGCAACAA
LOC_Os12g17570
Os.51561.1.S1_x_at--441--2031Chr12:10068418..10068442 (25 bp)
ACTACCCATTCTCGGAGCAGGTGGA
LOC_Os12g17570
Os.51561.1.S1_x_at--26--8371Chr12:10068334..10068358 (25 bp)
GGCGGTGCATCTTCTACGTCGGGAT
LOC_Os12g17570
Os.51561.1.S1_x_at--1153--6255Chr05:20505972..20505996 (25 bp)
GATGGGCAGCAACGACTACCTCAAC
LOC_Os05g34700
Os.51561.1.S1_x_at--1106--1851Chr12:10068094..10068118 (25 bp)
ACGACGATGACGCTGCTCCTAGTAG
LOC_Os12g17570
Os.51561.1.S1_x_at--159--3711Chr12:10068076..10068100 (25 bp)
CTAGTAGCGATTCCGGCACCGGCAT
LOC_Os12g17570
Os.51561.1.S1_x_at--1083--3791Chr12:10067561..10067585 (25 bp)
CTCGCCGCCATATGAATCCAATGAT
NONE
Os.51561.1.S1_x_at--323--5271Chr12:10067548..10067572 (25 bp)
GAATCCAATGATTAATCTCGCTGAC
NONE
Os.51561.1.S1_x_at--395--9511Chr12:10067533..10067557 (25 bp)
TCTCGCTGACATATGATCGATCATT
NONE
Os.51561.1.S1_x_at--527--3011Chr12:10067504..10067528 (25 bp)
AATGCATGCACTTACTTACGGCAAG
NONE
Os.51561.1.S1_x_at--715--1931Chr12:10067487..10067511 (25 bp)
ACGGCAAGAGCAGTGTATCTCGGTT
NONE
Target Sequence 
GGATCAGGCCCGAGACCGGCAACAACCTGGGTCGGCACTACCCATTCTCGGAGCAGGTGGAGCACTTCCGGGCGGCGGTG
CGGCAGATGGGGCCGAACGCCGGCTCGCCGGAGCGGCTCGGGCGGTGCATCTTCTACGTCGGGATGGGCAGCAACGACTA
CCTCAACAACTACTTCATGCCCAACTACTACACCACCGCGCAGTCCTACGACCCGGCCGCCTACGCCGCCGACCTCCTCC
AGGAGTACTCCCGCCAGCTCGCCGCCCTCCACGCCCTCGGCGCCCGCAAGTTCGTCCTCGCCGCCGTCGGCGACATCGGC
TGCATCCCCTACGAGCTCGCCCGCATCAGCAACAACCAAGACGACGATGACGCTGCTCCTAGTAGCGATTCCGGCACCGG
CATTAGCATCTCTCTCGGCGGCGTCGGTCTGACCGCCGGCGACGCTTACCCCATCAACGTCAGCCAGCTCGCCGCCATAT
GAATCCAATGATTAATCTCGCTGACATATGATCGATCATTGATCAATGCATGCACTTACTTACGGCAAGAGCAGTGTATC
TCGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51561.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis