Browse Element(s) Details


Os.51622.1.S1_at

Description gb:AK063200.1
DB_XREF= gi:32973218
TID=Os.51622.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51622 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-112-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-112-C07, full insert sequence.
FL= gb:AK063200.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2795011/11Ataxin-2 N-terminal region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27900OsAffx.12240.1.S1_at10/112+16508771..16509758hypothetical protein
LOC_Os02g27910OsAffx.24469.1.S1_x_at1/112+16511719..16512318hypothetical protein
LOC_Os02g27920OsAffx.24470.1.S1_at10/112+16515204..16519991retrotransposon protein, putative, unclassified
LOC_Os02g27920Os.38751.1.A1_at6/112+16515204..16519991retrotransposon protein, putative, unclassified
LOC_Os02g27920OsAffx.21264.1.S1_x_at1/112+16515204..16519991retrotransposon protein, putative, unclassified
LOC_Os02g27920OsAffx.24466.1.S1_x_at1/112+16515204..16519991retrotransposon protein, putative, unclassified
LOC_Os02g27920OsAffx.21264.1.S1_at1/112+16515204..16519991retrotransposon protein, putative, unclassified
LOC_Os02g27920OsAffx.30280.1.S1_x_at1/112+16515204..16519991retrotransposon protein, putative, unclassified
LOC_Os02g27920OsAffx.27810.1.S1_x_at1/112+16515204..16519991retrotransposon protein, putative, unclassified
LOC_Os02g27930OsAffx.31869.1.S1_at8/112+16521238..16522353retrotransposon protein, putative, unclassified
LOC_Os02g27930OsAffx.31869.5.S1_x_at6/112+16521238..16522353retrotransposon protein, putative, unclassified
LOC_Os02g27930OsAffx.31869.4.S1_x_at2/112+16521238..16522353retrotransposon protein, putative, unclassified
LOC_Os02g27930OsAffx.31869.3.S1_s_at1/112+16521238..16522353retrotransposon protein, putative, unclassified
LOC_Os02g27940OsAffx.24466.1.S1_x_at1/112+16524879..16528194Calcineurin B-like protein 3, putative
LOC_Os02g27940OsAffx.8338.1.S1_x_at1/112+16524879..16528194Calcineurin B-like protein 3, putative
LOC_Os02g27950Os.51622.1.S1_at11/112+16531344..16539876Ataxin-2 N-terminal region family protein, expressed
LOC_Os02g27950Os.7302.1.S1_at10/112+16531344..16539876Ataxin-2 N-terminal region family protein, expressed
LOC_Os02g27960Os.10048.1.S1_at10/112+16544381..16547049expressed protein
LOC_Os02g27970OsAffx.12241.1.S1_at11/112+16556012..16556304hypothetical protein
LOC_Os02g27980NANA2+16562510..16562972retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51622.1.S1_at--278--51Chr02:16535771..16535795 (25 bp)
ATTGTACTAGGTTACGTCACATCCA
LOC_Os02g27950
Os.51622.1.S1_at--709--7091Chr02:16535756..16535780 (25 bp)
GTCACATCCAATTCTTGGTTTGGTT
LOC_Os02g27950
Os.51622.1.S1_at--1130--8031Chr02:16535717..16535741 (25 bp)
GGAGTATCTCAGCTTTTCTTTCTAT
LOC_Os02g27950
Os.51622.1.S1_at--310--9091Chr02:16535628..16535652 (25 bp)
TGCTAATCTTCTTGGCACGCAGGAT
LOC_Os02g27950
Os.51622.1.S1_at--245--7871Chr02:16535494..16535518 (25 bp)
GGTATATATACTTCTCTCCACATTT
LOC_Os02g27950
Os.51622.1.S1_at--644--5131Chr02:16535466..16535490 (25 bp)
GCAAATTTCATCTATCTAATCCATA
LOC_Os02g27950
Os.51622.1.S1_at--904--9011Chr02:16535406..16535430 (25 bp)
TGCAAGCTGCGATATGGTTCTAACA
LOC_Os02g27950
Os.51622.1.S1_at--355--3051Chr02:16535378..16535402 (25 bp)
AATCGTGCTATTCGCTGGACATATG
LOC_Os02g27950
Os.51622.1.S1_at--741--7011Chr02:16535345..16535369 (25 bp)
GTACTTTTTAATGCTGAATCACTCG
LOC_Os02g27950
Os.51622.1.S1_at--455--9591Chr02:16535306..16535330 (25 bp)
TCATTAATCTTTTTCCAGGTGTGGT
LOC_Os02g27950
Os.51622.1.S1_at--246--10392Chr09:20518181..20518366 (25 bp)
TTTTCTCTGTTCTTTACTCCATCTA
NONE
Target Sequence 
ATTGTACTAGGTTACGTCACATCCAATTCTTGGTTTGGTTTTTTTGGGACGGAGGGAGTATCTCAGCTTTTCTTTCTATT
AACAAATATATTTTCTTACTACTATATGCAATATTTTTAAGCATGAAATCTTGTTTAAAACTTTGCTAATCTTCTTGGCA
CGCAGGATGAAGAATCATCTTCCCATTTATTTGGCACTGATTTGCCTGTCACTAACAATGTTAGCCAGTTAGTATCTCAG
TCCCAGCTGAATAAACTTTTGCCCATTGATGAAAGCAGGTATATATACTTCTCTCCACATTTGCTGCAAATTTCATCTAT
CTAATCCATACACATAAATTTGCATGTTACATCTGCTTTATACATTGCAAGCTGCGATATGGTTCTAACATAAAATCGTG
CTATTCGCTGGACATATGAGTTTTGTGTACTTTTTAATGCTGAATCACTCGGAAGTTGTGTTGTATCATTAATCTTTTTC
CAGGTGTGGTTGTGCTTTTTCTCTGTTCTTTACTCCATCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51622.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis