Browse Element(s) Details


Os.51655.1.S1_at

Description gb:AK063287.1
DB_XREF= gi:32973305
TID=Os.51655.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51655 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-113-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-D10, full insert sequence.
FL= gb:AK063287.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4072011/11FAD-binding domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40660Os.53180.1.S1_at11/118+25612597..25617531retrotransposon protein, putative, unclassified
LOC_Os08g40660Os.46012.2.S1_x_at7/118+25612597..25617531retrotransposon protein, putative, unclassified
LOC_Os08g40660Os.46012.3.S1_x_at6/118+25612597..25617531retrotransposon protein, putative, unclassified
LOC_Os08g40660Os.27088.1.A1_x_at4/118+25612597..25617531retrotransposon protein, putative, unclassified
LOC_Os08g40670NANA8+25619077..25620483Zinc knuckle family protein
LOC_Os08g40680Os.4867.1.S1_at11/118+25626018..25627092Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os08g40680OsAffx.17441.1.S1_at2/118+25626018..25627092Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os08g40690Os.4681.1.S1_at11/118+25629614..25630980Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os08g40700OsAffx.17442.1.S1_at11/118+25632130..25633661expressed protein
LOC_Os08g40710Os.49985.1.S1_at11/118+25634719..25636039retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g40720Os.51655.1.S1_at11/118+25636971..25638706FAD-binding domain-containing protein, putative, expressed
LOC_Os08g40720Os.51655.2.S1_x_at11/118+25636971..25638706FAD-binding domain-containing protein, putative, expressed
LOC_Os08g40730OsAffx.6096.1.S1_at11/118+25640800..25641639hypothetical protein
LOC_Os08g40740Os.9347.1.S1_at1/118+25645613..25646518Glycosyl hydrolases family 18 protein
LOC_Os08g40750OsAffx.29612.1.S1_at11/118+25648342..25652648hypothetical protein
LOC_Os08g40750Os.25139.1.A1_at5/118+25648342..25652648hypothetical protein
LOC_Os08g40750OsAffx.828.1.S1_x_at1/118+25648342..25652648hypothetical protein
LOC_Os08g40760Os.27691.2.S1_x_at2/118+25655075..25656004retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g40760Os.27691.1.S1_x_at1/118+25655075..25656004retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g40770Os.27691.1.S1_x_at4/118+25656258..25659518retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g40780OsAffx.17443.1.S1_at10/118+25661510..25663932hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51655.1.S1_at--492--4251Chr08:25637294..25637318 (25 bp)
CCGGTGGTGTGAACGTGGCGAGGAA
LOC_Os08g40720
Os.51655.1.S1_at--655--1911Chr08:25637282..25637306 (25 bp)
ACGTGGCGAGGAACGGGTGTGGAAT
LOC_Os08g40720
Os.51655.1.S1_at--1025--7571Chr08:25637253..25637277 (25 bp)
GGGCTGTGTGTTTGTTCGGAGGACG
LOC_Os08g40720
Os.51655.1.S1_at--92--8811Chr08:25637241..25637265 (25 bp)
TGTTCGGAGGACGAGCATTGCTCGC
LOC_Os08g40720
Os.51655.1.S1_at--1106--6691Chr08:25637240..25637264 (25 bp)
GTTCGGAGGACGAGCATTGCTCGCC
LOC_Os08g40720
Os.51655.1.S1_at--836--1051Chr08:25637210..25637234 (25 bp)
AGGGATACCTCTGCCGTCCGGGAAT
LOC_Os08g40720
Os.51655.1.S1_at--115--311Chr08:25637206..25637230 (25 bp)
ATACCTCTGCCGTCCGGGAATGGTG
LOC_Os08g40720
Os.51655.1.S1_at--52--3831Chr08:25637200..25637224 (25 bp)
CTGCCGTCCGGGAATGGTGTACCGT
LOC_Os08g40720
Os.51655.1.S1_at--439--9271Chr08:25637194..25637218 (25 bp)
TCCGGGAATGGTGTACCGTGACGCC
LOC_Os08g40720
Os.51655.1.S1_at--167--5291Chr08:25637189..25637213 (25 bp)
GAATGGTGTACCGTGACGCCCGTGT
LOC_Os08g40720
Os.51655.1.S1_at--655--791Chr08:25637187..25637211 (25 bp)
ATGGTGTACCGTGACGCCCGTGTGT
LOC_Os08g40720
Target Sequence 
CCGGTGGTGTGAACGTGGCGAGGAACGGGTGTGGAATGGAGGGGCTGTGTGTTTGTTCGGAGGACGAGCATTGCTCGCCG
GAGAAGGGATACCTCTGCCGTCCGGGAATGGTGTACCGTGACGCCCGTGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51655.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis