Browse Element(s) Details


Os.51672.2.S1_at

Description gb:AK063346.1
DB_XREF= gi:32973364
TID=Os.51672.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51672 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-B08, full insert sequence.
FL= gb:AK063346.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0575011/11Transferase family protein, expressed
LOC_Os11g206001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05680Os.45957.4.S1_x_at6/116+2567570..2572372retrotransposon protein, putative, unclassified
LOC_Os06g05680Os.45957.3.S1_x_at2/116+2567570..2572372retrotransposon protein, putative, unclassified
LOC_Os06g05690Os.2260.1.S1_at11/116+2573180..2575677Cysteine synthase, chloroplast precursor, putative, expressed
LOC_Os06g05700Os.47826.1.S1_at11/116+2578090..2580721Cysteine synthase, putative, expressed
LOC_Os06g05710OsAffx.4734.1.S1_at11/116+2581783..2582618pollen-specific protein, putative, expressed
LOC_Os06g05720Os.35125.1.S1_at11/116+2583097..2585157expressed protein
LOC_Os06g05730Os.53464.1.S1_at10/116+2586931..2587897expressed protein
LOC_Os06g05740Os.7225.1.S1_at10/116+2588022..2591249expressed protein
LOC_Os06g05740OsAffx.27467.1.S1_at1/116+2588022..2591249expressed protein
LOC_Os06g05750Os.51672.2.S1_at11/116+2591770..2593479Transferase family protein, expressed
LOC_Os06g05760OsAffx.5303.1.S1_at11/116+2606882..2607796Ubiquitin family protein
LOC_Os06g05770OsAffx.15277.1.S1_at11/116+2611136..2611802hypothetical protein
LOC_Os06g05780NANA6+2614721..2621390retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51672.2.S1_at--511--4053Chr11:11916666..11916685 (20 bp)
CGATGACCAGGGACAGGTTCCAGCA
LOC_Os11g20600
Os.51672.2.S1_at--93--4731Chr06:2593072..2593096 (25 bp)
GCTGGTCATGCCGTGGCTGCAGCAC
LOC_Os06g05750
Os.51672.2.S1_at--582--10551Chr06:2593157..2593181 (25 bp)
TTCTTCGCCGGCACGAGGTTGTGGC
LOC_Os06g05750
Os.51672.2.S1_at--206--4492Chr06:2593208..2593232 (25 bp)
GCCGGCCCGGATTGCTTGCTGAAGC
LOC_Os06g05750
Os.51672.2.S1_at--116--3971Chr06:2593215..2593239 (25 bp)
CGGATTGCTTGCTGAAGCCGGCGAC
LOC_Os06g05750
Os.51672.2.S1_at--876--8391Chr06:2593271..2593295 (25 bp)
GGCGCCCATGGTTCCAGATTGTGAT
LOC_Os06g05750
Os.51672.2.S1_at--612--6691Chr06:2593281..2593305 (25 bp)
GTTCCAGATTGTGATGAGCTCGCAG
LOC_Os06g05750
Os.51672.2.S1_at--252--5911Chr06:2593296..2593320 (25 bp)
GAGCTCGCAGTTTAGCAGTTTTTTG
LOC_Os06g05750
Os.51672.2.S1_at--574--4931Chr06:2593320..2593344 (25 bp)
GCTTGTAATTTAGGTGAATCTTGGA
LOC_Os06g05750
Os.51672.2.S1_at--533--5431Chr06:2593363..2593387 (25 bp)
GAACCATTTGTATATGCATTGTGGG
LOC_Os06g05750
Os.51672.2.S1_at--347--2393Chr09:2263142..2263161 (20 bp)
AAAAATGTCACATCCTAAAAATCCT
NONE
Target Sequence 
CGATGACCAGGGACAGGTTCCAGCAGCTGGTGGACTGGATGGAGACGAAGAAGGCGGCGGCGTTCAAGGACGGCGGGAAG
TGGACGGAGGCGGTGAACCTCGGCCTCGGGAGCCCGGCGATGGTGATCTCCGGCCTGCTCCCGTTCGCCATCGACGGCGA
CATGGGGTTCGGCAAGCCGAGGCTGGTCATGCCGTGGCTGCAGCACGGCAGGCTGGGGTCGGCATCGGCGACGGTGGTGC
CCAGCCCGGCCGGCGACGGGTCGTGGTTCTTCGCCGGCACGAGGTTGTGGCCGCGGCTGCTGGAGGTGGTGGAGGCCGCC
GGCCCGGATTGCTTGCTGAAGCCGGCGACGGCGGCGAGCCTGGGGCTCGCTTACCCCGCCGGCGCCCATGGTTCCAGATT
GTGATGAGCTCGCAGTTTAGCAGTTTTTTGCTTGTAATTTAGGTGAATCTTGGAAAATAATTCGGAAATTTTGAACCATT
TGTATATGCATTGTGGGATTTTTTTTTATTTTTTTGAACCTTTTTTATTTTAAATTTTAAAAATGTCACATCCTAAAAAT
CCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51672.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis