Browse Element(s) Details


Os.51688.1.S1_s_at

Description gb:AK063398.1
DB_XREF= gi:32973416
TID=Os.51688.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51688 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-114-H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-H11, full insert sequence.
FL= gb:AK063398.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4107011/11bZIP transcription factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41000Os.17783.1.S1_at11/115+23950403..23955844Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os05g41010Os.25020.1.S1_at11/115+23957763..23960697oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os05g41030Os.8994.1.S1_at11/115+23962324..23964637Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os05g41040NANA5+23967746..23971172transposon protein, putative, Mutator sub-class
LOC_Os05g41050OsAffx.27271.1.S1_at11/115+23971575..23972158hypothetical protein
LOC_Os05g41060Os.10931.1.S1_at9/115+23973918..23977426ADP-ribosylation factor, putative, expressed
LOC_Os05g41060Os.4733.1.S1_at1/115+23973918..23977426ADP-ribosylation factor, putative, expressed
LOC_Os05g41070Os.51688.1.S1_s_at11/115+23979465..23982759bZIP transcription factor family protein, expressed
LOC_Os05g41070Os.51688.1.S1_at11/115+23979465..23982759bZIP transcription factor family protein, expressed
LOC_Os05g41080Os.18405.1.S1_at10/115+23984503..23986986Histone H3, putative, expressed
LOC_Os05g41090Os.53033.1.S1_at11/115+23987984..23991882Calcium and calcium/calmodulin-dependent serine/threonine-proteinkinase, putative, expressed
LOC_Os05g41100Os.51939.1.S1_at11/115+23992386..23994674Krr1 family protein, expressed
LOC_Os05g41110Os.22564.1.S1_at11/115+23994851..2399676660S ribosomal protein L30, putative, expressed
LOC_Os05g41120Os.38127.1.S1_s_at11/115+23997899..24003783Serologically defined breast cancer antigen NY-BR-84 homolog, putative, expressed
LOC_Os05g41120Os.38127.1.S1_at7/115+23997899..24003783Serologically defined breast cancer antigen NY-BR-84 homolog, putative, expressed
LOC_Os05g41130Os.27954.1.A1_at11/115+24006538..24008510F-box family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006950biological_processresponse to stress
GO:0009738biological_processabscisic acid mediated signaling
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51688.1.S1_s_at--53--891Chr05:23982390..23982414 (25 bp)
AGGCGAACAAGCTCGGCCGCCTTCT
LOC_Os05g41070
Os.51688.1.S1_s_at--392--9151Chr05:23982460..23982484 (25 bp)
TGCCCACATATTTCGCATCCTTTGG
LOC_Os05g41070
Os.51688.1.S1_s_at--160--10191Chr05:23982501..23982525 (25 bp)
TATAGCTTGAGATTCCATCTTCCCC
LOC_Os05g41070
Os.51688.1.S1_s_at--1076--9211Chr05:23982527..23982551 (25 bp)
TCCAGCCGGTGGTGGTTTAGAGCTT
LOC_Os05g41070
Os.51688.1.S1_s_at--72--1371Chr05:23982545..23982569 (25 bp)
AGAGCTTGTAAACACCAGCACCAGC
LOC_Os05g41070
Os.51688.1.S1_s_at--379--3391Chr05:23982591..23982615 (25 bp)
CAGCTGCTGATCTCTTCGGAGGCTT
LOC_Os05g41070
Os.51688.1.S1_s_at--885--6411Chr05:23982599..23982623 (25 bp)
GATCTCTTCGGAGGCTTTGTCACTT
LOC_Os05g41070
Os.51688.1.S1_s_at--84--4891Chr05:23982612..23982636 (25 bp)
GCTTTGTCACTTGTCAGTATGTAAA
LOC_Os05g41070
Os.51688.1.S1_s_at--507--7111Chr05:23982624..23982648 (25 bp)
GTCAGTATGTAAATTCTCCAAGGCA
LOC_Os05g41070
Os.51688.1.S1_s_at--981--3591Chr05:23982676..23982700 (25 bp)
CTTGGTTATACATGATTGGGCCCTT
LOC_Os05g41070
Os.51688.1.S1_s_at--90--731Chr05:23982687..23982711 (25 bp)
ATGATTGGGCCCTTTGCCTGTTTCT
LOC_Os05g41070
Target Sequence 
AGGCGAACAAGCTCGGCCGCCTTCTGATGGTGACGATGTCCATAGTAAATTTTGTAGATTATATGGGGTCTGCCCACATA
TTTCGCATCCTTTGGCGGTAGGAACAATCGATATAGCTTGAGATTCCATCTTCCCCCTCCAGCCGGTGGTGGTTTAGAGC
TTGTAAACACCAGCACCAGCAGAGCCCTAGCCATGTCGCCCCAGCTGCTGATCTCTTCGGAGGCTTTGTCACTTGTCAGT
ATGTAAATTCTCCAAGGCACGTGTCGCTGTTAAGTTCTCAGAGCTCCTTGGTTATACATGATTGGGCCCTTTGCCTGTTT
CT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51688.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis