Browse Element(s) Details


Os.51712.1.S1_at

Description gb:AK063500.1
DB_XREF= gi:32973518
TID=Os.51712.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51712 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-116-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-116-E03, full insert sequence.
FL= gb:AK063500.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4221011/11membrane-associated salt-inducible protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42180NANA2+25361071..25365896retrotransposon protein, putative, unclassified, expressed
LOC_Os02g42190OsAffx.21096.2.S1_x_at1/112+25368823..25372024Protein kinase domain containing protein
LOC_Os02g42200Os.17969.1.S1_at11/112+25373912..25388704transcription factor, putative, expressed
LOC_Os02g42200Os.51995.1.S1_x_at10/112+25373912..25388704transcription factor, putative, expressed
LOC_Os02g42200Os.18487.1.S1_at1/112+25373912..25388704transcription factor, putative, expressed
LOC_Os02g42210Os.51712.1.S1_at11/112+25387106..25388704membrane-associated salt-inducible protein, putative, expressed
LOC_Os02g42220Os.6489.1.S1_at11/112+25394018..25398463transposon protein, putative, unclassified, expressed
LOC_Os02g42220OsAffx.12451.1.S1_x_at11/112+25394018..25398463transposon protein, putative, unclassified, expressed
LOC_Os02g42230Os.15035.1.S1_at10/112+25398544..25402499OB-fold nucleic acid binding domain containing protein, expressed
LOC_Os02g42240Os.7065.1.S1_at11/112+25404559..25405031expressed protein
LOC_Os02g42250OsAffx.24684.1.S1_at11/112+25405640..254065995-azacytidine resistance protein, putative
LOC_Os02g42270OsAffx.12452.1.S1_at11/112+25408842..254097895-azacytidine resistance protein, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51712.1.S1_at--1006--10751Chr02:25388131..25388155 (25 bp)
TTGGACGGTGCATTGGTGATCTTCA
LOC_Os02g42210
Os.51712.1.S1_at--1149--2811Chr02:25388275..25388299 (25 bp)
AAGTTCCCAGAGCAATTGCTGTCAG
LOC_Os02g42210
Os.51712.1.S1_at--1135--1291Chr02:25388346..25388370 (25 bp)
AGATGCAGGTACTCGGGCAGAATGT
LOC_Os02g42210
Os.51712.1.S1_at--430--2471Chr02:25388378..25388402 (25 bp)
AAGAAACTCCTTCTGAGGCCGAGGC
LOC_Os02g42210
Os.51712.1.S1_at--1008--1371Chr02:25388414..25388438 (25 bp)
AGACACTTGAGCTGGAAGATCCTTC
LOC_Os02g42210
Os.51712.1.S1_at--37--751Chr02:25388454..25388478 (25 bp)
ATGTATGGCAGAGGCGTCCACTAGT
LOC_Os02g42210
Os.51712.1.S1_at--241--5591Chr02:25388482..25388506 (25 bp)
GAAATGCCACGGGATTCTGCTTAAT
LOC_Os02g42210
Os.51712.1.S1_at--1133--10531Chr02:25388583..25388607 (25 bp)
TTCTAATGCTCCCAAGTACAGAGGT
LOC_Os02g42210
Os.51712.1.S1_at--745--151Chr02:25388612..25388636 (25 bp)
ATTAGTTTCTAGATGTGGACTCCTG
LOC_Os02g42210
Os.51712.1.S1_at--28--7531Chr02:25388626..25388650 (25 bp)
GTGGACTCCTGAGCCACTAAGAGTT
LOC_Os02g42210
Os.51712.1.S1_at--995--7571Chr02:25388656..25388680 (25 bp)
GGGCTGACAATGCTTATAATTTCGT
LOC_Os02g42210
Target Sequence 
TTGGACGGTGCATTGGTGATCTTCAAGGAAAGCTATAGGAGCAACAAGGTGCCAGATTTTAGGACAATGAGTGGATTGGT
TGAGGGATTGACAAAGGCTGGCAGGGTGGCTGAGGCAAAGAATATTGTTGCCAAGATGAAGAAGAAGTTCCCAGAGCAAT
TGCTGTCAGGGTGGATGAAACTCGAGAAGGAGCTTGGGTTGAACTCAGATAGCGGAGATGCAGGTACTCGGGCAGAATGT
ATATCTGAAGAAACTCCTTCTGAGGCCGAGGCTGCTATGCCAAAGACACTTGAGCTGGAAGATCCTTCTTCTGATGAAAC
AGAATGTATGGCAGAGGCGTCCACTAGTGAGGAAATGCCACGGGATTCTGCTTAATCAGATGTTATTTATGTATTTCAAG
TTTAATTTGGTTAGGATGTTTTTACATTGTGCATTCTCTACAAAGGAAGAATTTCTAATGCTCCCAAGTACAGAGGTAAA
CATTAGTTTCTAGATGTGGACTCCTGAGCCACTAAGAGTTATATTGGGCTGACAATGCTTATAATTTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51712.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis