Browse Element(s) Details


Os.51789.1.S1_at

Description gb:AK063716.1
DB_XREF= gi:32973734
TID=Os.51789.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51789 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-120-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-120-C05, full insert sequence.
FL= gb:AK063716.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4252011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42480Os.56126.1.S1_at10/113+23587568..23594348expressed protein
LOC_Os03g42480Os.5139.2.S1_x_at1/113+23587568..23594348expressed protein
LOC_Os03g42480OsAffx.1396.1.S1_x_at1/113+23587568..23594348expressed protein
LOC_Os03g42480Os.5139.2.S1_at1/113+23587568..23594348expressed protein
LOC_Os03g42490NANA3+23596182..23596505hypothetical protein
LOC_Os03g42500NANA3+23598592..23599562hypothetical protein
LOC_Os03g42510OsAffx.32023.1.S1_at9/113+23602186..23605688transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g42520Os.51789.1.S1_at11/113+23610229..23611456expressed protein
LOC_Os03g42530OsAffx.32283.1.A1_at9/113+23612836..23621906retrotransposon protein, putative, unclassified
LOC_Os03g42530OsAffx.11392.2.S1_x_at6/113+23612836..23621906retrotransposon protein, putative, unclassified
LOC_Os03g42530OsAffx.9772.1.S1_at3/113+23612836..23621906retrotransposon protein, putative, unclassified
LOC_Os03g42530OsAffx.11392.3.S1_at1/113+23612836..23621906retrotransposon protein, putative, unclassified
LOC_Os03g42530OsAffx.27793.1.S1_at1/113+23612836..23621906retrotransposon protein, putative, unclassified
LOC_Os03g42530OsAffx.25352.1.S1_at1/113+23612836..23621906retrotransposon protein, putative, unclassified
LOC_Os03g42540Os.45976.1.S1_x_at6/113+23625903..23629075transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g42540Os.45976.1.S1_at3/113+23625903..23629075transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51789.1.S1_at--1003--1151Chr03:23610550..23610574 (25 bp)
AGTAGTAATGAGTCCGGGTCGTCGT
LOC_Os03g42520
Os.51789.1.S1_at--1026--3591Chr03:23610663..23610687 (25 bp)
CATTGCCTCCCTCGAGACCAGAGTG
LOC_Os03g42520
Os.51789.1.S1_at--1076--2171Chr03:23611167..23611191 (25 bp)
ACACGGGCAGCGATGAGAAGCAGCA
LOC_Os03g42520
Os.51789.1.S1_at--1071--2771Chr03:23611238..23611262 (25 bp)
AAGAGCTTGGTCAAGTCCTGCGTCA
LOC_Os03g42520
Os.51789.1.S1_at--467--8231Chr03:23611265..23611289 (25 bp)
GGCAAACTCAACACCAACGACTGAT
LOC_Os03g42520
Os.51789.1.S1_at--330--8831Chr03:23611286..23611310 (25 bp)
TGATTGATCCATCTATCTCTCACCT
LOC_Os03g42520
Os.51789.1.S1_at--258--3551Chr03:23611295..23611319 (25 bp)
CATCTATCTCTCACCTTTTAATTAC
LOC_Os03g42520
Os.51789.1.S1_at--895--131Chr03:23611315..23611339 (25 bp)
ATTACTTGCAGGAGAGCGCGCTTAA
LOC_Os03g42520
Os.51789.1.S1_at--474--8051Chr03:23611325..23611349 (25 bp)
GGAGAGCGCGCTTAATTATATCATC
LOC_Os03g42520
Os.51789.1.S1_at--458--9291Chr03:23611348..23611372 (25 bp)
TCCGTTGTCACGTATGCTGGCATAT
LOC_Os03g42520
Os.51789.1.S1_at--550--9891Chr03:23611430..23611454 (25 bp)
TACTTTTGGGATGGTCGTTCTTGGA
LOC_Os03g42520
Target Sequence 
AGTAGTAATGAGTCCGGGTCGTCGTCGGTGGCGAGCACGCCGAGGGGGATGAGCTGCCGGCCGGCGAAGGAGGCGCTGGA
GGAGGCGCGGGCCAAGGGCAGCCTCGTCGACCGCATTGCCTCCCTCGAGACCAGAGTGCTCAAGATGGAGGAGGAGATGG
AGGTGACGTCGTCGGATGTGAGGAACACGGGCAGCGATGAGAAGCAGCAGCGGAGTGCAGCTGGCAATAAGAAGGCGGAG
AAGAGGAAGAGGTTGAAGAGCTTGGTCAAGTCCTGCGTCAGGGGCAAACTCAACACCAACGACTGATTGATCCATCTATC
TCTCACCTTTTAATTACTTGCAGGAGAGCGCGCTTAATTATATCATCCGTTGTCACGTATGCTGGCATATAGCGCATATA
TGTATCATGTATATAAGTATATATGCACGTAAAAGTTGTGAATCATGTACTTTTGGGATGGTCGTTCTTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51789.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis