Browse Element(s) Details


Os.51942.1.S1_at

Description gb:AK064347.1
DB_XREF= gi:32974365
TID=Os.51942.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51942 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-107-H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-107-H12, full insert sequence.
FL= gb:AK064347.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3051011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g30460OsAffx.19897.1.S1_at9/1112+18259003..18262874hypothetical protein
LOC_Os12g30480OsAffx.19899.1.S1_at10/1112+18269753..18270540hypothetical protein
LOC_Os12g30490OsAffx.31945.1.S1_at11/1112+18272661..18277079ribosomal protein L4/L1 family protein
LOC_Os12g30500OsAffx.19900.1.S1_at9/1112+18279643..18281922expressed protein
LOC_Os12g30510Os.51942.1.S1_at11/1112+18282447..18284483expressed protein
LOC_Os12g30520Os.52717.1.S1_at11/1112+18286633..18290493Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os12g30529NANA12+18298916..18299486NA
LOC_Os12g30540OsAffx.19901.1.S1_at11/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.15107.1.S1_at11/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.50936.1.S1_at9/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.50936.1.S1_x_at8/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed
LOC_Os12g30540Os.21262.1.S1_x_at1/1112+18306101..18320755ubiquitin-specific protease 12, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51942.1.S1_at--95--311Chr12:18282994..18283018 (25 bp)
ATAGCTGTTTAGGTTTGTGTCACAA
LOC_Os12g30510
Os.51942.1.S1_at--795--8631Chr12:18282881..18282905 (25 bp)
TGAGTAACCGTGGTCTGGGTCTACC
LOC_Os12g30510
Os.51942.1.S1_at--448--9971Chr12:18282860..18282884 (25 bp)
TACCTGCTTGTGTTGCCTTGATATT
LOC_Os12g30510
Os.51942.1.S1_at--364--1051Chr12:18282829..18282853 (25 bp)
AGGTGTAGATCTCCCTAATCTATTT
LOC_Os12g30510
Os.51942.1.S1_at--330--7911Chr12:18282796..18282820 (25 bp)
GGTTCCTTTGAACACTGCAGATGAT
LOC_Os12g30510
Os.51942.1.S1_at--802--1111Chr12:18282687..18282711 (25 bp)
AGTGAAGGAGGCTTTTCCACCACCA
LOC_Os12g30510
Os.51942.1.S1_at--550--5231Chr12:18282613..18282637 (25 bp)
GAATATCTGAATTTTCGCCATGAGA
LOC_Os12g30510
Os.51942.1.S1_at--357--3171Chr12:18282579..18282603 (25 bp)
AATTGTTCCTGTAGCTTGTCTTCTA
LOC_Os12g30510
Os.51942.1.S1_at--382--7151Chr12:18282562..18282586 (25 bp)
GTCTTCTAGAGTCATGTTGCTCATA
LOC_Os12g30510
Os.51942.1.S1_at--1062--9971Chr12:18282519..18282543 (25 bp)
TAGCCATGTACCTACCTTGTTGGAG
LOC_Os12g30510
Os.51942.1.S1_at--194--2491Chr12:18282472..18282496 (25 bp)
AACAGTTGTTAACATCGGAGCTTCA
LOC_Os12g30510
Target Sequence 
ATAGCTGTTTAGGTTTGTGTCACAATCAACGAATCTGAATTTTCTGTTCAGAGAATTTGAGTGAATAGTTCTATGTTACA
TATGTGAGTAACCTTTTGTAATAAGGAATTTGTTGAGTAACCGTGGTCTGGGTCTACCTGCTTGTGTTGCCTTGATATTT
TCTTTAGGTGTAGATCTCCCTAATCTATTTGACATATTGGTTCCTTTGAACACTGCAGATGATAGAAGAGTGCGGTAAAC
GATTTTCGAAGGATGAGCGGGGAGAAGCATGCAATGAAGATGAACGAGTTGAGGAATTCTTGGAGCTAGTGAAGGAGGCT
TTTCCACCACCACCTCCAAAGCCAGAGGCAATGATAGAGTGAGCGTGGTATAACTGTAGAAGAATATCTGAATTTTCGCC
ATGAGATGCATATTCAATTGTTCCTGTAGCTTGTCTTCTAGAGTCATGTTGCTCATAGAGACACTAGGGGTTTGGTAGCC
ATGTACCTACCTTGTTGGAGGCATCTATATATTAGAATTAGAAACAGTTGTTAACATCGGAGCTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51942.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis