Browse Element(s) Details


Os.51959.1.S2_at

Description gb:AK101902.1
DB_XREF= gi:32987111
TID=Os.51959.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51959 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033071C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033071C04, full insert sequence.
FL= gb:AK064414.1 gb:AK101902.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3437011/11D-mannose binding lectin family protein, expressed
LOC_Os04g344201/11D-mannose binding lectin family protein, expressed
LOC_Os04g344101/11D-mannose binding lectin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34340OsAffx.26324.1.S1_at10/114+20610346..20611681hypothetical protein
LOC_Os04g34350OsAffx.22947.2.S1_x_at9/114+20615631..20620203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34350OsAffx.22947.1.S1_x_at7/114+20615631..20620203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34350OsAffx.22947.3.S1_x_at6/114+20615631..20620203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34350OsAffx.22947.5.S1_x_at3/114+20615631..20620203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34360Os.51959.1.S1_at1/114+20623729..20625862Protein kinase domain containing protein, expressed
LOC_Os04g34370Os.51959.1.S2_at11/114+20630519..20633266D-mannose binding lectin family protein, expressed
LOC_Os04g34370Os.51959.1.S1_at11/114+20630519..20633266D-mannose binding lectin family protein, expressed
LOC_Os04g34380OsAffx.14132.1.S1_at11/114+20634694..20636204expressed protein
LOC_Os04g34390OsAffx.3995.1.S1_at11/114+20637914..20640322D-mannose binding lectin family protein, expressed
LOC_Os04g34400NANA4+20641066..20643086retrotransposon protein, putative, unclassified
LOC_Os04g34410OsAffx.12928.1.S1_at2/114+20647196..20650715D-mannose binding lectin family protein
LOC_Os04g34410OsAffx.14131.1.S1_at1/114+20647196..20650715D-mannose binding lectin family protein
LOC_Os04g34410OsAffx.30458.2.S1_at1/114+20647196..20650715D-mannose binding lectin family protein
LOC_Os04g34410Os.51959.1.S2_at1/114+20647196..20650715D-mannose binding lectin family protein
LOC_Os04g34420Os.51959.1.S1_at2/114+20655867..20658293D-mannose binding lectin family protein, expressed
LOC_Os04g34420OsAffx.14131.1.S1_at1/114+20655867..20658293D-mannose binding lectin family protein, expressed
LOC_Os04g34420Os.51959.1.S2_at1/114+20655867..20658293D-mannose binding lectin family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51959.1.S2_at--359--6671Chr04:20632746..20632770 (25 bp)
GTTGCACGCAAACTTCTCAATGGAG
LOC_Os04g34370
Os.51959.1.S2_at--536--5331Chr04:20632777..20632801 (25 bp)
GAAGTCTTGTGGATGCCAGTTTGAA
LOC_Os04g34370
Os.51959.1.S2_at--935--2951Chr04:20632886..20632910 (25 bp)
AATGGCTGAGGTGGTACAGGCCCTT
LOC_Os04g34370
Os.51959.1.S2_at--758--9871Chr04:20632900..20632924 (25 bp)
TACAGGCCCTTGAGGGTCTACTTGA
LOC_Os04g34370
Os.51959.1.S2_at--245--6133Chr04:20658192..20658216 (25 bp)
GAGGGTCTACTTGAACTCGACATGC
LOC_Os04g34420
Os.51959.1.S2_at--888--2851Chr04:20632955..20632979 (25 bp)
AAGTGCTATCACAGGAGACTCACAT
LOC_Os04g34370
Os.51959.1.S2_at--812--8131Chr04:20633050..20633074 (25 bp)
GGACATTATAATTCATCTTGCCTTT
LOC_Os04g34370
Os.51959.1.S2_at--240--9791Chr04:20633138..20633162 (25 bp)
TAAGATCTCTGTGCCCAAGCAGGAG
LOC_Os04g34370
Os.51959.1.S2_at--890--3231Chr04:20633153..20633177 (25 bp)
CAAGCAGGAGATCGTGCCAGCCTTC
LOC_Os04g34370
Os.51959.1.S2_at--1018--10051Chr04:20633220..20633244 (25 bp)
TAGTGTACCGTATACATTTTTCATG
LOC_Os04g34370
Os.51959.1.S2_at--413--732Chr04:20633242..20633266 (25 bp)
ATGTTGCCAATTGAGATGTTTCCGG
LOC_Os04g34370
Target Sequence 
GTTGCACGCAAACTTCTCAATGGAGACATCGGAAGTCTTGTGGATGCCAGTTTGAAAGGTGACATGAACCTAGTGGAGGT
TGAAAGAGCTTGCAATTGCATGTTGGTGCATTCAAGACAACGAATTTGATCGACCAACAATGGCTGAGGTGGTACAGGCC
CTTGAGGGTCTACTTGAACTCGACATGCCTCCATTGCCAAGACTACTAAGTGCTATCACAGGAGACTCACATTCAGTGAC
ACCACAATATTTTGATTCAGTGTAAATCTATATGCTGATTCACAATTAAAAGTAGTCTACCAGGACATTATAATTCATCT
TGCCTTTTTAGAAAATTAGGGATAACATCTAAGGTCTTTAAGAGATCATGTTAAATAAACTCGTAGTTATTAAGATCTCT
GTGCCCAAGCAGGAGATCGTGCCAGCCTTCCAGACAAAATATATTTTGTGTCTATGTAAGATCTGTAGGTATTAGTGTAC
CGTATACATTTTTCATGTTGCCAATTGAGATGTTTCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51959.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis