Browse Element(s) Details


Os.52012.1.S1_x_at

Description gb:AK064528.1
DB_XREF= gi:32974546
TID=Os.52012.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52012 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-111-G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-111-G12, full insert sequence.
FL= gb:AK064528.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3609010/11Plus-3 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36040Os.6854.1.S1_at11/119+20751248..20754166Rhodanese-like domain containing protein, expressed
LOC_Os09g36040OsAffx.18004.1.S1_x_at11/119+20751248..20754166Rhodanese-like domain containing protein, expressed
LOC_Os09g36050OsAffx.6490.1.S1_at11/119+20756459..20756899hypothetical protein
LOC_Os09g36060Os.54812.1.S1_at11/119+20763721..20768090Endoglucanase 1 precursor, putative, expressed
LOC_Os09g36060OsAffx.9743.1.S1_x_at1/119+20763721..20768090Endoglucanase 1 precursor, putative, expressed
LOC_Os09g36070OsAffx.18005.1.S1_at11/119+20768152..20770338Cytochrome P450 family protein
LOC_Os09g36080Os.11426.2.S1_x_at2/119+20773802..20775749Cytochrome P450 family protein, expressed
LOC_Os09g36090Os.13470.1.S1_at11/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36090OsAffx.30147.1.S1_at11/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36090Os.52012.1.S1_x_at10/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36090Os.46045.2.S1_x_at1/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36100Os.11928.1.S1_at11/119+20787061..20789982expressed protein
LOC_Os09g36100Os.47993.1.S1_x_at11/119+20787061..20789982expressed protein
LOC_Os09g36100OsAffx.30148.1.S1_s_at11/119+20787061..20789982expressed protein
LOC_Os09g36110OsAffx.18006.1.S1_at11/119+20793975..20797285Subtilisin N-terminal Region family protein, expressed
LOC_Os09g36120Os.54437.1.S1_at11/119+20797439..20798055expressed protein
LOC_Os09g36130Os.57099.1.S1_at10/119+20798680..20802439expressed protein
LOC_Os09g36140Os.51862.1.S1_at10/119+20810885..20812689RNA recognition motif 2 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003676molecular_functionnucleic acid binding
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52012.1.S1_x_at--122--9611Chr09:20781277..20781301 (25 bp)
TCATCTGTGCGCCATCTAGAAGGCA
LOC_Os09g36090
Os.52012.1.S1_x_at--792--3171NONE
AATTGTCCAATCGTGCTTTGAGCAG
NONE
Os.52012.1.S1_x_at--646--8911Chr09:20781464..20781488 (25 bp)
TGAGCAGTGACCATCGACCAAGAGA
LOC_Os09g36090
Os.52012.1.S1_x_at--794--8131Chr09:20781503..20781527 (25 bp)
GGACATCTACATCGTCAGCTGAAGA
LOC_Os09g36090
Os.52012.1.S1_x_at--995--4331Chr09:20781530..20781554 (25 bp)
CCAGTTGGGCTTCGAAGGAGCTCTT
LOC_Os09g36090
Os.52012.1.S1_x_at--315--7311Chr09:20781592..20781616 (25 bp)
GTGCTGTCCCAATTTGAAGTCCAAT
LOC_Os09g36090
Os.52012.1.S1_x_at--147--2351Chr09:20781712..20781736 (25 bp)
AAAGCACGTGTTGGTCATTTTGAGA
LOC_Os09g36090
Os.52012.1.S1_x_at--65--6351Chr09:20781735..20781759 (25 bp)
GATGCTGAAGCTTCTTGAATCCCAT
LOC_Os09g36090
Os.52012.1.S1_x_at--112--9011Chr09:20781750..20781774 (25 bp)
TGAATCCCATTTCCTCATGAGCGAG
LOC_Os09g36090
Os.52012.1.S1_x_at--811--4611Chr09:20781770..20781794 (25 bp)
GCGAGGTCTCGCCAGTTGAAATTGA
LOC_Os09g36090
Os.52012.1.S1_x_at--112--6951Chr09:20781814..20781838 (25 bp)
GTAGACCCTGATCCTAGTCTGGATG
LOC_Os09g36090
Target Sequence 
TCATCTGTGCGCCATCTAGAAGGCAATTCAAAGAGGAAAGGAAGGAAGCGATCAAAGCAAGCTGCTAACGATGACAGTTC
TGTAGTTAAAGATAGCACTAGGAAATCTACAAAGCGAGGCCTGACAGGTGGCCGTGATACTAAAAGTTCTACAGGGAGAA
AGGTTAGAAAATTGTCCAATCGTGCTTTGAGCAGTGACCATCGACCAAGAGAATCTGAAAGCGTAGGGACATCTACATCG
TCAGCTGAAGAGACCAGTTGGGCTTCGAAGGAGCTCTTGGATTTTGTAGCAAATATGAAAAATGGTGACAAATCTGTGCT
GTCCCAATTTGAAGTCCAATCCCTTTTACTTGATTATATTAAACGTGAAAACCTCCGGGATCCTCGCAGGAAAAGTCAGA
TAATTTGTGATTCTATGCTCAAAAGCCTTTTTGGGAAAGCACGTGTTGGTCATTTTGAGATGCTGAAGCTTCTTGAATCC
CATTTCCTCATGAGCGAGGTCTCGCCAGTTGAAATTGATGACAACCATGGTGGTGTTGTAGACCCTGATCCTAGTCTGGA
TG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52012.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis