Browse Element(s) Details


Os.52101.1.S1_at

Description gb:AK064720.1
DB_XREF= gi:32974738
TID=Os.52101.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52101 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-118-E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-118-E10, full insert sequence.
FL= gb:AK064720.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3167010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31640OsAffx.26274.1.S1_at9/114+18769047..18771463hypothetical protein
LOC_Os04g31640OsAffx.17597.1.S1_x_at1/114+18769047..18771463hypothetical protein
LOC_Os04g31650Os.35344.3.S1_x_at9/114+18773274..18776539transposon protein, putative, Mutator sub-class
LOC_Os04g31650Os.35344.18.S1_x_at6/114+18773274..18776539transposon protein, putative, Mutator sub-class
LOC_Os04g31650OsAffx.22940.5.S1_x_at3/114+18773274..18776539transposon protein, putative, Mutator sub-class
LOC_Os04g31660OsAffx.14073.1.S1_at11/114+18779551..18779973hypothetical protein
LOC_Os04g31670OsAffx.14074.1.S1_at11/114+18788451..18789343hypothetical protein
LOC_Os04g31670Os.52101.1.S1_at10/114+18788451..18789343hypothetical protein
LOC_Os04g31680OsAffx.14075.1.S1_at11/114+18790715..18792054hypothetical protein
LOC_Os04g31690Os.11184.1.S1_at11/114+18797458..18800398expressed protein
LOC_Os04g31700Os.8672.1.S1_at11/114+18800365..18805535methylisocitrate lyase 2, putative, expressed
LOC_Os04g31710OsAffx.3968.1.S1_at11/114+18807125..18808116expressed protein
LOC_Os04g31720OsAffx.26275.1.S1_at11/114+18808476..18809186hypothetical protein
LOC_Os04g31730Os.50181.1.S1_at10/114+18810476..18811405expressed protein
LOC_Os04g31740OsAffx.3969.1.S1_at10/114+18813961..18814651hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52101.1.S1_at--357--851Chr04:18789025..18789049 (25 bp)
ATGGCGATGGCGTACGTACGCAGCT
LOC_Os04g31670
Os.52101.1.S1_at--619--6991Chr04:18789040..18789064 (25 bp)
GTACGCAGCTAGGTCGCCATTGTTG
LOC_Os04g31670
Os.52101.1.S1_at--488--4751Chr04:18789064..18789088 (25 bp)
GCTGACTTGCTGTAACGAACACTTC
LOC_Os04g31670
Os.52101.1.S1_at--491--4111Chr04:18789079..18789103 (25 bp)
CGAACACTTCAGTAGCATATGCTAT
LOC_Os04g31670
Os.52101.1.S1_at--839--10171Chr04:18789101..18789125 (25 bp)
TATAGCTGCTGCGAATGGCGCCATG
LOC_Os04g31670
Os.52101.1.S1_at--632--4591Chr04:18789129..18789153 (25 bp)
GCGACATGTGTCGTGTTCAGTTTGG
LOC_Os04g31670
Os.52101.1.S1_at--657--6431NONE
GATCATCTGGTTGGATGCATGCATC
NONE
Os.52101.1.S1_at--144--9071Chr04:18789186..18789210 (25 bp)
TGCATCAACACAAGGCTTCTTCTTC
LOC_Os04g31670
Os.52101.1.S1_at--621--10571Chr04:18789217..18789241 (25 bp)
TTCTAGCTTCTTGTTGTTGCTTCTC
LOC_Os04g31670
Os.52101.1.S1_at--673--8811Chr04:18789231..18789255 (25 bp)
TGTTGCTTCTCTCTTACTCTTGATG
LOC_Os04g31670
Os.52101.1.S1_at--768--7931Chr04:18789266..18789290 (25 bp)
GGATTAATTTACAGCTAGCCTGCAT
LOC_Os04g31670
Target Sequence 
ATGGCGATGGCGTACGTACGCAGCTAGGTCGCCATTGTTGCTGACTTGCTGTAACGAACACTTCAGTAGCATATGCTATA
GCTGCTGCGAATGGCGCCATGGCTGCGACATGTGTCGTGTTCAGTTTGGGATGGATGGATGGTGATCATCTGGTTGGATG
CATGCATCAACACAAGGCTTCTTCTTCTTCTTCTTCTAGCTTCTTGTTGTTGCTTCTCTCTTACTCTTGATGTGTAAATG
CTGGATTAATTTACAGCTAGCCTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52101.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis